, February 2019 — Incorporating alignment uncertainty into Felsenstein’s phylogenetic bootstrap to improve its reliability.. Bioinformatics (Oxford, England) , , MEDLINE:30726875
, November 2018 — Generalized Bootstrap Supports for Phylogenetic Analyses of Protein Sequences Incorporating Alignment Uncertainty. Systematic Biology vol. 67, n° 6, p. 997-1009 WOS:000456691200005
ISSN
1063-5157
, January 2018 — Improving pairwise comparison of protein sequences with domain co-occurrence. Plos Computational Biology vol. 14, n° 1, e1005889 WOS:000423845000006
, November 2017 — The Role of Phylogenetics as a Tool to Predict the Spread of Resistance. Journal of Infectious Diseases vol. 216, , S820–S823 WOS:000417239400008
ISSN
0022-1899
, September 2017 — SMS : Smart Model Selection in PhyML. Molecular Biology and Evolution vol. 34, n° 9, p. 2422-2424 WOS:000408307400022
ISSN
0737-4038
, May 2017 — The tenth gene of HIV. M S-Medecine Sciences vol. 33, n° 5, p. 484-485 WOS:000405872400008
ISSN
0767-0974
, March 2017 — Inferring epidemiological parameters from phylogenies using regression-ABC: A comparative study. Plos Computational Biology vol. 13, n° 3, e1005416 WOS:000398031900041
ISSN
1553-734X
, February 2017 — The combinatorics of overlapping genes. Journal of Theoretical Biology vol. 415, , p. 90-101 WOS:000396964300011
ISSN
0022-5193
, November 2016 — In-depth analysis of HIV-1 drug resistance mutations in HIV-infected individuals failing first-line regimens in West and Central Africa. Aids vol. 30, n° 17, p. 2577-2589 WOS:000387206200003
ISSN
0269-9370
, October 2016 — Concomitant emergence of the antisense protein gene of HIV-1 and of the pandemic. Proceedings of the National Academy of Sciences of the United States of
America vol. 113, n° 41, p. 11537-11542 WOS:000384886900068
ISSN
0027-8424
, April 2016 — A ’Stochastic Safety Radius’ for Distance-Based Tree Reconstruction. Algorithmica vol. 74, n° 4, p. 1386-1403 WOS:000373640000007
ISSN
0178-4617
, January 2016 — Fast and accurate branch lengths estimation for phylogenomic trees. Bmc Bioinformatics vol. 17, , p. 23 WOS:000367709000001
ISSN
1471-2105
, January 2016 — Fast Dating Using Least-Squares Criteria and Algorithms. Systematic Biology vol. 65, n° 1, p. 82-97 WOS:000369955500006
ISSN
1063-5157
, October 2015 — FastME 2.0: A Comprehensive, Accurate, and Fast Distance-Based Phylogeny Inference Program. Molecular Biology and Evolution vol. 32, n° 10, p. 2798-2800 WOS:000361987100026
ISSN
0737-4038
, September 2015 — A phylotype-based analysis highlights the role of drug-naive HIV-positive individuals in the transmission of antiretroviral resistance in the UK. Aids vol. 29, n° 15, p. 1917-1925 WOS:000368492500001
ISSN
0269-9370
, 2014 — Predicting the Ancestral Character Changes in a Tree is Typically Easier than Predicting the Root State. Systematic Biology vol. 63, n° 3, p. 421-435 WOS:000334752600011
ISSN
1063-5157
, 2014 — Deep Conservation of Human Protein Tandem Repeats within the Eukaryotes. Molecular Biology and Evolution vol. 31, n° 5, p. 1132-1148 WOS:000335914400007
ISSN
0737-4038
, 2013 — Searching for virus phylotypes. Bioinformatics vol. 29, n° 5, p. 561-570 WOS:000315623000004
ISSN
1367-4803
, 2012 — Combinatorics of distance-based tree inference. Proceedings of the National Academy of Sciences of the United States of
America vol. 109, n° 41, p. 16443-16448
ISSN
0027-8424
, 2012 — Modeling Protein Evolution with Several Amino Acid Replacement Matrices Depending on Site Rates. Molecular Biology and Evolution vol. 29, n° 10, p. 2921-2936
ISSN
0737-4038