Zhukova Anna, Hecht Frédéric, Maday Yvon & Gascuel Olivier, 2023 — Fast and Accurate Maximum-Likelihood Estimation of Multi-Type Birth-Death Epidemiological Models from Phylogenetic Trees. Abstract Multi-type birth-death (MTBD) models are phylodynamic analogies of compartmental models in classical epidemiology… Systematic Biology , , syad059
ISSN
1063-5157, 1076-836X
https://dx.doi.org/10.1093/sysbio/syad059
Zhukova Anna, Dunn David & Gascuel Olivier, 2023 — Modeling Drug Resistance Emergence and Transmission in HIV-1 in the UK. A deeper understanding of HIV-1 transmission and drug resistance mechanisms can lead to improvements in current treatment… Viruses vol. 15, n° 6, p. 1244
ISSN
1999-4915
https://dx.doi.org/10.3390/v15061244
Tremeaux Pauline, Lemoine Frederic, Melard Adeline, Gousset Marine, Boufassa Faroudy, Orr Sylvie, Monceaux Valerie, Gascuel Olivier, Lambotte Olivier, Hocqueloux Laurent, Saez-Cirion Asier, Rouzioux Christine, Avettand-Fenoel Veronique & Cohort CODEX VISCONTI ANRS, 2023 — In-depth characterization of full-length archived viral genomes after nine years of posttreatment HIV control. MICROBIOLOGY SPECTRUM vol. 11, n° 1, tex.earlyaccessdate: JAN 2023 tex.orcid-numbers: Saez-Cirion, Asier/0000-0003-2406-7536 Avettand-Fenoel, Veronique/0000-0002-7022-2990 TREMEAUX, Pauline/0000-0001-8783-9885 tex.researcherid-numbers: avettand-fenoel, veronique/A-4707-2012 Saez-Cirion, Asie
ISSN
2165-0497
https://dx.doi.org/10.1128/spectrum.03267-22
Zaharias Paul, Lemoine Frédéric & Gascuel Olivier, 2023 — Robustness of Felsenstein’s versus Transfer Bootstrap Supports with respect to Taxon Sampling. Abstract The bootstrap method is based on resampling sequence alignments and re-estimating trees. Felsenstein’s bootstrap… Systematic Biology vol. 72, n° 6, syad052
ISSN
1063-5157, 1076-836X
https://dx.doi.org/10.1093/sysbio/syad052
Catanzaro Daniele, Frohn Martin, Gascuel Olivier & Pesenti Raffaele, 2023 — A massively parallel branch-&-bound algorithm for the balanced minimum evolution problem. Computers & Operations Research vol. 158, , p. 106308
ISSN
03050548
https://dx.doi.org/10.1016/j.cor.2023.106308