Xie Ruopeng, Adam Dillon, Hu Shu, Cowling Benjamin, Gascuel Olivier, Zhukova Anna & Dhanasekaran Vijaykrishna, July 2024 — Deep learning of SARS-CoV-2 outbreak phylodynamics with contact tracing data. Deep learning has emerged as a powerful tool for phylodynamic analysis, addressing common computational limitations affecting… , , Type: 10.1101/2024.06.10.24308687
https://pasteur.hal.science/pasteur-04638422
Xie Ruopeng, Adam Dillon C, Hu Shu, Cowling Benjamin J, Gascuel Olivier, Zhukova Anna & Dhanasekaran Vijaykrishna, 2024 — Integrating contact tracing data to enhance outbreak phylodynamic inference: a deep learning approach. Molecular Biology and Evolution , , msae232
ISSN
0737-4038, 1537-1719
https://dx.doi.org/10.1093/molbev/msae232
Morel Marie, Zhukova Anna, Lemoine Frédéric & Gascuel Olivier, 2024 — Accurate Detection of Convergent Mutations in Large Protein Alignments with ConDor. Abstract Evolutionary convergences are observed at all levels, from phenotype to DNA and protein sequences, and changes at… Genome Biology and Evolution vol. 16, n° 4, evae040
ISSN
1759-6653
https://dx.doi.org/10.1093/gbe/evae040
Gascuel O. & Lemoine F., 2024 — « Measures of Branch Support in Phylogenetics » in Models and Methods for Biological Evolution.. , , p. 213-234
ISBN
978-1-78945-069-9
https://www.iste.co.uk/book.php?id=2117
Lemoine Frédéric & Gascuel Olivier, 2024 — The Bayesian Phylogenetic Bootstrap, Application to Short Trees and Branches. Molecular Biology and Evolution , , msae238
ISSN
0737-4038, 1537-1719
https://dx.doi.org/10.1093/molbev/msae238