Rimet Frédéric, Lemonnier Clarisse, Alric Benjamin, Beja Pedro, Bittner Lucie, Bylemans Jonas, Leese Florian, et al. 2025. “Omics to Study and Manage Aquatic Environments: A Snapshot From the A Qua E C O Mics Meeting (EvianlesBains, 2025)”. Molecular Ecology 34 (July). Wiley. https://hal.sorbonne-universite.fr/hal-05273477.
1.
Monjot Arthur, Bronner Gisèle, Courtine Damien, et al. Trait-based approach coupled to metatranscriptomic-derived sequence similarity network: towards the depiction of the functional diversity of freshwater microbial eukaryotes. In: 16th International Congress of Protistology (ICOP ISOP — 2025). ; 2025. https://hal.science/hal-05134808.
Rizos Iris, Romac Sarah, Juery Caroline, Berthelier Charlotte, Decelle Johan, Bernardes Juliana, Corre Erwan, Bittner Lucie, and Not Fabrice. 2025. “Transcriptomic Analyses Reveal Sexual Cues in Reproductive Life Stages of Uncultivated Acantharia (Radiolaria)”. Protist 177 (April). Elsevier: 126102. https://hal.science/hal-05127873.
Orsini Luisa, Maignien Loïs, Meissner Kristian, Thalinger Bettina, Beja Pedro, Logares Ramiro, Bittner Lucie, et al. 2025. AquaEcOmics Meeting: Exploring Aquatic Ecology through Omics. March 17-20, 2025. Program and Abstracts Booklet. https://hal.inrae.fr/hal-05250537.
Monjot Arthur, Rousseau Jérémy, Bittner Lucie, and Lepère Cécile. 2025. “Metatranscriptomes-Based Sequence Similarity Networks Uncover Genetic Signatures Within Parasitic Freshwater Microbial Eukaryotes”. Microbiome 13 (February). BioMed Central: 43. https://hal.science/hal-04984439.
Monjot Arthur, Rousseau Jérémy, Bittner Lucie, and Lepère Cécile. 2025. “Metatranscriptomes-Based Sequence Similarity Networks Uncover Genetic Signatures Within Parasitic Freshwater Microbial Eukaryotes”. Microbiome 13 (January). BioMed Central: 43. doi:10.1186/s40168-024-02027-0.
Grasso Gianluca, Debruyne Régis, Adamo Martino, Rué Olivier, Lejzerowicz Franck, Bittner Lucie, Bianciotto Valeria, and Marmeisse Roland. 2025. “Ancient Microbiomes As Mirrored by DNA Extracted From CenturyOld Herbarium Plants and Associated Soil”. Molecular Ecology Resources, January, e14122. doi:10.1111/1755-0998.14122.
ISSN
1755-098X, 1755-0998
Rimet Frédéric, Lemonnier Clarisse, Alric Benjamin, Beja Pedro, Bittner Lucie, Bylemans Jonas, Leese Florian, et al. 2025. “Omics to Study and Manage Aquatic Environments: A Snapshot From the A Qua E C O Mics Meeting (EvianlesBains, 2025)”. Molecular Ecology 34 (January). Wiley: e70041. doi:10.1111/mec.70041.
ISSN
0962-1083, 1365-294X
Laymand Emile, Galand Pierre E., Bouget François-Yves, Bittner Lucie, and Joux Fabien. 2025. “FiveYear Time Series Reveals ShortTerm Blooms of Planktonic Fungi in a Coastal Mediterranean Site”. Environmental Microbiology Reports 17 (January): e70154. doi:10.1111/1758-2229.70154.
ISSN
1758-2229, 1758-2229
Rihm Gaspard, Benedetti Fabio, and Bittner Lucie. 2025. “Do Trophic Strategies Shape Biogeography and Environmental Niches? Marine Dinoflagellates As a Case Study”. ISME Communications 5 (January): ycaf153. doi:10.1093/ismeco/ycaf153.
ISSN
2730-6151
Grasso Gianluca, Rotunno Silvia, Debruyne Régis, Bittner Lucie, Miozzi Laura, Marmeisse Roland, and Bianciotto Valeria. 2024. “Identification of DNA Viruses in Ancient DNA from Herbarium Samples”. In Viral Metagenomics, 2732:221–234. doi:10.1007/978-1-0716-3515-5\_15.
ISBN
978-1-0716-3514-8
Schickele Alexandre, Debeljak Pavla, Ayata Sakina-Dorothée, Bittner Lucie, Pelletier Eric, Guidi Lionel, and Irisson Jean-Olivier. 2024. “The Genomic Potential of Photosynthesis in Piconanoplankton Is Functionally Redundant But Taxonomically Structured at a Global Scale”. Science Advances 10 (August). American Association for the Advancement of Science (AAAS): eadl0534. https://hal.science/hal-04735120.
Schickele Alexandre, Debeljak Pavla, Ayata Sakina-Dorothée, Bittner Lucie, Pelletier Eric, Guidi Lionel, and Irisson Jean-Olivier. 2023. Picoeukaryotic Photosynthetic Potential Is Functionally Redundant But Taxonomically Structured at Global Scale. https://cea.hal.science/cea-04321429.
1.
Ayata Sakina-dorothée, Martini Séverine, Laviale Martin, et al. Functional trait-based approaches as a common framework for aquatic ecologists: Synthesis and recent results. In: Limnology and Oceanography. Vol. 66. Association for the Sciences of Limnology and Oceanography (ASLO); 2023:965–994. doi:10.1002/lno.11655
Rizos Iris, Debeljak Pavla, Finet Thomas, Klein Dylan, Ayata Sakina-Dorothée, Not Fabrice, and Bittner Lucie. 2023. “Beyond the Limits of the Unassigned Protist Microbiome: Inferring Large-Scale Spatio-Temporal Patterns of Syndiniales Marine Parasites”. ISME Communications 3 (January): 16. doi:10.1038/s43705-022-00203-7.
ISSN
2730-6151
Da Silva Ophélie, Ayata Sakina-Dorothée, Ser-Giacomi Enrico, Leconte Jade, Pelletier Eric, Fauvelot Cécile, Madoui Mohammed-Amin, Guidi Lionel, Lombard Fabien, and Bittner Lucie. 2022. “Genomic Differentiation of Three Picophytoplankton Species in the Mediterranean Sea”. Environmental Microbiology 24 (January): 6086–6099. doi:10.1111/1462-2920.16171.
ISSN
1462-2912, 1462-2920
Faure Emile, Ayata Sakina-Dorothée, and Bittner Lucie. 2021. “Towards Omics-Based Predictions of Planktonic Functional Composition from Environmental Data”. Nature Communications 12 (January): 4361. doi:10.1038/s41467-021-24547-1.
ISSN
2041-1723
Marchet Camille, Lecompte Lolita, Limasset Antoine, Bittner Lucie, and Peterlongo Pierre. 2020. “A Resource-Frugal Probabilistic Dictionary and Applications in Bioinformatics”. Discrete Applied Mathematics 274 (March): 92–102. doi:10.1016/j.dam.2018.03.035.
ISSN
0166218X
Bittner Lucie. 2019. “L’expédition Tara Océans, un Rêve de Marin, de Science et de Partage”. In Sciences. Bâtir de Nouveaux Mondes.. https://hal.archives-ouvertes.fr/hal-02922440.
ISBN
978-2-271-12626-9
1.
Martini Severine, Larras Floriane, Boyé Aurélien, et al. Functional trait-based approaches as a common framework for freshwater and marine ecologists. In: 11th Symposium for European Freshwater Sciences (SEFS). ; 2019. https://hal.univ-lorraine.fr/hal-03232606.