Rimet Frédéric, Lemonnier Clarisse, Alric Benjamin, Beja Pedro, Bittner Lucie, Bylemans Jonas, Leese Florian, et al. 2025. « Omics to Study and Manage Aquatic Environments: A Snapshot From the A qua E c O mics Meeting (EvianlesBains, 2025) ». Molecular Ecology 34 (juillet). Wiley. https://hal.sorbonne-universite.fr/hal-05273477.
1.
Monjot Arthur, Bronner Gisèle, Courtine Damien, et al. Trait-based approach coupled to metatranscriptomic-derived sequence similarity network: towards the depiction of the functional diversity of freshwater microbial eukaryotes. In: 16th International Congress of Protistology (ICOP/ISOP — 2025). ; 2025. https://hal.science/hal-05134808.
Rizos Iris, Romac Sarah, Juery Caroline, Berthelier Charlotte, Decelle Johan, Bernardes Juliana, Corre Erwan, Bittner Lucie, et Not Fabrice. 2025. « Transcriptomic analyses reveal sexual cues in reproductive life stages of uncultivated Acantharia (Radiolaria) ». Protist 177 (avril). Elsevier: 126102. https://hal.science/hal-05127873.
Orsini Luisa, Maignien Loïs, Meissner Kristian, Thalinger Bettina, Beja Pedro, Logares Ramiro, Bittner Lucie, et al. 2025. AquaEcOmics meeting: exploring aquatic ecology through omics. March 17-20, 2025. Program and abstracts booklet. https://hal.inrae.fr/hal-05250537.
Monjot Arthur, Rousseau Jérémy, Bittner Lucie, et Lepère Cécile. 2025. « Metatranscriptomes-based sequence similarity networks uncover genetic signatures within parasitic freshwater microbial eukaryotes ». Microbiome 13 (février). BioMed Central: 43. https://hal.science/hal-04984439.
Monjot Arthur, Rousseau Jérémy, Bittner Lucie, et Lepère Cécile. 2025. « Metatranscriptomes-based sequence similarity networks uncover genetic signatures within parasitic freshwater microbial eukaryotes ». Microbiome 13 (janvier). BioMed Central: 43. doi:10.1186/s40168-024-02027-0.
Grasso Gianluca, Debruyne Régis, Adamo Martino, Rué Olivier, Lejzerowicz Franck, Bittner Lucie, Bianciotto Valeria, et Marmeisse Roland. 2025. « Ancient Microbiomes as Mirrored by DNA Extracted From CenturyOld Herbarium Plants and Associated Soil ». Molecular Ecology Resources, janvier, e14122. doi:10.1111/1755-0998.14122.
ISSN
1755-098X, 1755-0998
Rimet Frédéric, Lemonnier Clarisse, Alric Benjamin, Beja Pedro, Bittner Lucie, Bylemans Jonas, Leese Florian, et al. 2025. « Omics to Study and Manage Aquatic Environments: A Snapshot From the A qua E c O mics Meeting (EvianlesBains, 2025) ». Molecular Ecology 34 (janvier). Wiley: e70041. doi:10.1111/mec.70041.
ISSN
0962-1083, 1365-294X
Laymand Emile, Galand Pierre E., Bouget François-Yves, Bittner Lucie, et Joux Fabien. 2025. « FiveYear Time Series Reveals ShortTerm Blooms of Planktonic Fungi in a Coastal Mediterranean Site ». Environmental Microbiology Reports 17 (janvier): e70154. doi:10.1111/1758-2229.70154.
ISSN
1758-2229, 1758-2229
Rihm Gaspard, Benedetti Fabio, et Bittner Lucie. 2025. « Do trophic strategies shape biogeography and environmental niches? Marine dinoflagellates as a case study ». ISME Communications 5 (janvier): ycaf153. doi:10.1093/ismeco/ycaf153.
ISSN
2730-6151
Grasso Gianluca, Rotunno Silvia, Debruyne Régis, Bittner Lucie, Miozzi Laura, Marmeisse Roland, et Bianciotto Valeria. 2024. « Identification of DNA Viruses in Ancient DNA from Herbarium Samples ». In Viral Metagenomics, 2732:221–234. doi:10.1007/978-1-0716-3515-5\_15.
ISBN
978-1-0716-3514-8
Schickele Alexandre, Debeljak Pavla, Ayata Sakina-Dorothée, Bittner Lucie, Pelletier Eric, Guidi Lionel, et Irisson Jean-Olivier. 2024. « The genomic potential of photosynthesis in piconanoplankton is functionally redundant but taxonomically structured at a global scale ». Science Advances 10 (août). American Association for the Advancement of Science (AAAS): eadl0534. https://hal.science/hal-04735120.
Schickele Alexandre, Debeljak Pavla, Ayata Sakina-Dorothée, Bittner Lucie, Pelletier Eric, Guidi Lionel, et Irisson Jean-Olivier. 2023. Picoeukaryotic photosynthetic potential is functionally redundant but taxonomically structured at global scale. https://cea.hal.science/cea-04321429.
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Ayata Sakina-dorothée, Martini Séverine, Laviale Martin, et al. Functional trait-based approaches as a common framework for aquatic ecologists: Synthesis and recent results. In: Limnology and Oceanography. Vol. 66. Association for the Sciences of Limnology and Oceanography (ASLO); 2023:965–994. doi:10.1002/lno.11655
Rizos Iris, Debeljak Pavla, Finet Thomas, Klein Dylan, Ayata Sakina-Dorothée, Not Fabrice, et Bittner Lucie. 2023. « Beyond the limits of the unassigned protist microbiome: inferring large-scale spatio-temporal patterns of Syndiniales marine parasites ». ISME Communications 3 (janvier): 16. doi:10.1038/s43705-022-00203-7.
ISSN
2730-6151
Da Silva Ophélie, Ayata Sakina-Dorothée, Ser-Giacomi Enrico, Leconte Jade, Pelletier Eric, Fauvelot Cécile, Madoui Mohammed-Amin, Guidi Lionel, Lombard Fabien, et Bittner Lucie. 2022. « Genomic differentiation of three picophytoplankton species in the Mediterranean Sea ». Environmental Microbiology 24 (janvier): 6086–6099. doi:10.1111/1462-2920.16171.
ISSN
1462-2912, 1462-2920
Faure Emile, Ayata Sakina-Dorothée, et Bittner Lucie. 2021. « Towards omics-based predictions of planktonic functional composition from environmental data ». Nature Communications 12 (janvier): 4361. doi:10.1038/s41467-021-24547-1.
ISSN
2041-1723
Marchet Camille, Lecompte Lolita, Limasset Antoine, Bittner Lucie, et Peterlongo Pierre. 2020. « A resource-frugal probabilistic dictionary and applications in bioinformatics ». Discrete Applied Mathematics 274 (mars): 92–102. doi:10.1016/j.dam.2018.03.035.
ISSN
0166218X
Bittner Lucie. 2019. « L’expédition Tara Océans, un rêve de marin, de science et de partage ». In Sciences. Bâtir de nouveaux mondes.. https://hal.archives-ouvertes.fr/hal-02922440.
ISBN
978-2-271-12626-9
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Martini Severine, Larras Floriane, Boyé Aurélien, et al. Functional trait-based approaches as a common framework for freshwater and marine ecologists. In: 11th Symposium for European Freshwater Sciences (SEFS). ; 2019. https://hal.univ-lorraine.fr/hal-03232606.