Oury Nicolas, Noël Cyril, Mona Stefano, Aurelle Didier & Magalon Helene, 2022 — From Genomics to Integrative Taxonomy? The Case Study of Pocillopora Corals. Abstract With the advent of genomics, sequencing thousands of loci from hundreds of individuals now appears feasible at… bioRxiv PREPRINT , , PREPRINT
https://dx.doi.org/DOI: 10.1101/2022.10.04.510617
Voznica J., Zhukova A., Boskova V., Saulnier E., Lemoine F., Moslonka-Lefebvre M. & Gascuel O., December 2022 — Deep learning from phylogenies to uncover the epidemiological dynamics of outbreaks. Nature Communications vol. 13, n° 1, p. 3896
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2041-1723
https://dx.doi.org/10.1038/s41467-022-31511-0
Seabra Sofia G, Libin Pieter J K, Theys Kristof, Zhukova Anna, Potter Barney I, Nebenzahl-Guimaraes Hanna, Gorbalenya Alexander E, Sidorov Igor A, Pimentel Victor, Pingarilho Marta, de Vasconcelos Ana T R, Dellicour Simon, Khouri Ricardo, Gascuel Olivier, Vandamme Anne-Mieke et al., 2022 — Genome-wide diversity of Zika virus: Exploring spatio-temporal dynamics to guide a new nomenclature proposal. Virus Evolution vol. 8, n° 1, veac029
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2057-1577
https://dx.doi.org/10.1093/ve/veac029
Seo Tae-Kun, Gascuel Olivier & Thorne Jeffrey L, 2022 — Measuring Phylogenetic Information of Incomplete Sequence Data. Abstract Widely used approaches for extracting phylogenetic information from aligned sets of molecular sequences rely upon… Systematic Biology vol. 71, n° 3, p. 630-648
ISSN
1063-5157, 1076-836X
https://dx.doi.org/10.1093/sysbio/syab073
Porrelli Stefano, Gerbault-Seureau Michele, Rozzi Roberto, Chikhi Rayan, Curaudeau Manon, Ropiquet Anne & Hassanin Alexandre, 2022 — Draft genome of the lowland anoa (Bubalus depressicornis) and comparison with buffalo genome assemblies (Bovidae, Bubalina). G3-GENES GENOMES GENETICS vol. 12, n° 11, tex.earlyaccessdate: SEP 2022 tex.orcid-numbers: Ropiquet, Anne/0000-0003-3755-5467 Hassanin, Alexandre/0000-0002-4905-8540 Curaudeau, Manon/0000-0003-3356-0701 Porrelli, Stefano/0000-0003-3878-7745 tex.researcherid-numbers: Ropiquet, Anne/E-6154-2011 Has
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2160-1836
https://dx.doi.org/10.1093/g3journal/jkac234
Catanzaro Daniele, Frohn Martin, Gascuel Olivier & Pesenti Raffaele, July 2022 — A tutorial on the balanced minimum evolution problem. EUROPEAN JOURNAL OF OPERATIONAL RESEARCH vol. 300, n° 1, p. 1-19 tex.earlyaccessdate: FEB 2022 tex.eissn: 1872-6860 tex.orcid-numbers: Catanzaro, Daniele/0000-0001-9427-1562 Pesenti, Raffaele/0000-0001-5890-4238 GASCUEL, Olivier/0000-0002-9412-9723 Frohn, Martin/0000-0002-5002-4049 tex.researcherid-numbers: Frohn, Mart
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0377-2217
https://dx.doi.org/10.1016/j.ejor.2021.08.004
Amrane Samir, Jaubert Chloé, Bedrat Amina, Rundstadler Tiffany, Recordon-Pinson Patricia, Aknin Cindy, Guédin Aurore, De Rache Aurore, Bartolucci Laura, Diene Ibra, Lemoine Frédéric, Gascuel Olivier, Pratviel Geneviève, Mergny Jean-Louis & Andreola Marie-Line, 2022 — Deciphering RNA G-quadruplex function during the early steps of HIV-1 infection. Abstract G-quadruplexes (G4s) are four-stranded nucleic acid structures formed by the stacking of G-tetrads. Here we… Nucleic Acids Research vol. 50, n° 21, p. 12328-12343
ISSN
0305-1048, 1362-4962
https://dx.doi.org/10.1093/nar/gkac1030
Danesh Gonché, Saulnier Emma, Gascuel Olivier, Choisy Marc & Alizon Samuel, 2022 — < span style="font-variant:small-caps;">TiPS</span> : Rapidly simulating trajectories and phylogenies from compartmental models. Methods in Ecology and Evolution , , 2041–210X.14038
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2041-210X, 2041-210X
https://dx.doi.org/10.1111/2041-210X.14038