Zhukova Anna, Dunn David & Gascuel Olivier, 2023 — Modeling Drug Resistance Emergence and Transmission in HIV-1 in the UK. A deeper understanding of HIV-1 transmission and drug resistance mechanisms can lead to improvements in current treatment… Viruses vol. 15, n° 6, p. 1244
ISSN
1999-4915
https://dx.doi.org/10.3390/v15061244
Tremeaux Pauline, Lemoine Frederic, Melard Adeline, Gousset Marine, Boufassa Faroudy, Orr Sylvie, Monceaux Valerie, Gascuel Olivier, Lambotte Olivier, Hocqueloux Laurent, Saez-Cirion Asier, Rouzioux Christine, Avettand-Fenoel Veronique & Cohort CODEX VISCONTI ANRS, 2023 — In-depth characterization of full-length archived viral genomes after nine years of posttreatment HIV control. MICROBIOLOGY SPECTRUM vol. 11, n° 1, tex.earlyaccessdate: JAN 2023 tex.orcid-numbers: Saez-Cirion, Asier/0000-0003-2406-7536 Avettand-Fenoel, Veronique/0000-0002-7022-2990 TREMEAUX, Pauline/0000-0001-8783-9885 tex.researcherid-numbers: avettand-fenoel, veronique/A-4707-2012 Saez-Cirion, Asie
ISSN
2165-0497
https://dx.doi.org/10.1128/spectrum.03267-22
Zaharias Paul, Lemoine Frédéric & Gascuel Olivier, 2023 — Robustness of Felsenstein’s versus Transfer Bootstrap Supports with respect to Taxon Sampling. Abstract The bootstrap method is based on resampling sequence alignments and re-estimating trees. Felsenstein’s bootstrap… Systematic Biology vol. 72, n° 6, syad052
ISSN
1063-5157, 1076-836X
https://dx.doi.org/10.1093/sysbio/syad052
Vidovszky MZ, Kapitány S, Gellért A, Harrach B, Görföl T, Boldogh SA, Kohl C, Wibbelt G, Müehldorfer K, Kemenesi G, Gembu GC, Hassanin A, Tu VT, Estók P, Horváth A et al., 2023 — Detection and genetic characterization of circoviruses in more than 80 bat species from eight countries on four continents. Abstract Several bat-associated circoviruses and circular rep-encoding single-stranded DNA (CRESS DNA) viruses have been… VETERINARY RESEARCH COMMUNICATIONS vol. 47, n° 3, p. 1561-1573
ISSN
0165-7380
https://dx.doi.org/10.1007/s11259-023-10111-3
Veron Geraldine, Daniel Caroline, Pagani Paolo, San Emmanuel Do Linh, Kitchener Andrew C. & Hassanin Alexandre, 2023 — A tale of two African mongooses (Carnivora: Herpestidae): differing genetic diversity and geographical structure across a continent. Mammalian Biology vol. 103, n° 1, p. 37-52 tex.earlyaccessdate: OCT 2022 tex.eissn: 1618-1476 tex.orcid-numbers: Hassanin, Alexandre/0000-0002-4905-8540 Daniel, Caroline/0000-0002-7168-2411 Do Linh San, Emmanuel/0000-0002-6513-5665 tex.researcherid-numbers: Hassanin, Alexandre/AAP-8634-2020 tex.un
ISSN
1616-5047
https://dx.doi.org/10.1007/s42991-022-00321-8
Rice Gavin, David Jean, Gompel Nicolas, Yassin Amir & Rebeiz Mark, March 2023 — Resolving Between Novelty and Homology in the Rapidly Evolving Phallus of Drosophila. The genitalia present some of the most rapidly evolving anatomical structures in the animal kingdom, possessing a variety of… Journal of Experimental Zoology Part B: Molecular and Developmental Evolution vol. 340, n° 2, p. 182-196 ISBN: 1552-5007 Publisher: Wiley Type: 10.1002/jez.b.23113
https://hal.science/hal-03444389
Hassanin Alexandre & Rambaud Opale, 2023 — Retracing Phylogenetic, Host and Geographic Origins of Coronaviruses with Coloured Genomic Bootstrap Barcodes: SARS-CoV and SARS-CoV-2 as Case Studies. Phylogenetic trees of coronaviruses are difficult to interpret because they undergo frequent genomic recombination. Here, we… Viruses vol. 15, n° 2, p. 406
ISSN
1999-4915
https://dx.doi.org/10.3390/v15020406
Deamer D., Ter Ovanessian L.M.P. & Maurel M.C., December 2023 — « Studies in MineralAssisted Protometabolisms. Ch.9 » in The First Steps of Life.. vol. Chapter 9, , p. 193-215
ISBN
978-1-394-26414-8
https://dx.doi.org/10.1002/9781394264155.ch9
Audouze Jean & Maurel Marie-Christine, October 2023 — Du cosmos à la vie (Préface d’Eric Orsenna). , ,
ISBN
978-2-8098-4836-6
https://hal.science/hal-04564511
Deamer David & Maurel Marie-Christine, December 2023 — « Viruses, Viroids and the Origins of Life, Viruses, Viroids and the Origins of Life - Chapitre5 » in The First Steps of Life.. , , Issue: Chapter 5 Type: 10.1002/9781394264155.ch5
ISBN
978-1-78945-165-8
https://onlinelibrary.wiley.com/doi/10.1002/9781394264155.ch5
Curaudeau Manon, Besombes Camille, Nakouné Emmanuel, Fontanet Arnaud, Gessain Antoine & Hassanin Alexandre, March 2023 — Identifying the Most Probable Mammal Reservoir Hosts for Monkeypox Virus Based on Ecological Niche Comparisons. Viruses vol. 15, n° 3, p. 727 Accession Number: 36992436 ISBN: 1999-4915 Publisher: MDPI Type: 10.3390/v15030727
ISSN
1999-4915
https://dx.doi.org/10.3390/v15030727
Catanzaro Daniele, Frohn Martin, Gascuel Olivier & Pesenti Raffaele, 2023 — A massively parallel branch-&-bound algorithm for the balanced minimum evolution problem. Computers & Operations Research vol. 158, , p. 106308
ISSN
03050548
https://dx.doi.org/10.1016/j.cor.2023.106308
Lesturgie Pierre, Denton John S. S., Yang Lei, Corrigan Shannon, Kneebone Jeff, Laso-Jadart Romuald, Lynghammar Arve, Fedrigo Olivier, Mona Stefano & Naylor Gavin J. P., 2025 — Short-term evolutionary implications of an introgressed size-determining supergene in a vulnerable population. Nature Communications vol. 16, n° 1, p. 1096
ISSN
2041-1723
https://dx.doi.org/10.1038/s41467-025-56126-z
Baltzis Athanasios, Santus Luisa, Langer Björn E., Magis Cedrik, De Vienne Damien M., Gascuel Olivier, Mansouri Leila & Notredame Cedric, 2025 — multistrap: boosting phylogenetic analyses with structural information. Nature Communications vol. 16, n° 1, p. 293
ISSN
2041-1723
https://dx.doi.org/10.1038/s41467-024-55264-0
Décout Jean-Luc & Maurel Marie-Christine, 2025 — Purine Chemistry in the Early RNA World at the Origins of Life: From RNA and Nucleobases Lesions to Current Key Metabolic Routes. ChemBioChem , , p. 2500035
ISSN
1439-4227, 1439-7633
https://dx.doi.org/10.1002/cbic.202500035
Maurel Marie-Christine, 2025 — « L’ADN hier, aujourd’hui, …demain » in Cycle de conférences - Aux origines 3.. , , tex.hal_id: hal-04981295 tex.hal_version: v1
https://hal.science/hal-04981295
Togkousidis Anastasis, Stamatakis Alexandros & Gascuel Olivier, 2025 — Accelerating Maximum Likelihood Phylogenetic Inference via Early Stopping to Evade (Over-)optimization. Systematic Biology , , syaf043
ISSN
1063-5157, 1076-836X
https://dx.doi.org/10.1093/sysbio/syaf043