Ledoux Jean-Baptiste, Gomez-Garrido Jessica, Cruz Fernando, Camara Ferreira Francisco, Matos Ana, Sarropoulou Xenia, Ramirez-Calero Sandra, Aurelle Didier, Lopez-Sendino Paula, Grayson Natalie, Moore Bradley, Antunes Agostinho, Aguilera Laura, Gut Marta, Salces-Ortiz Judit et al., February 2025 — Chromosome-Level Genome Assembly and Annotation of Corallium rubrum : A Mediterranean Coral Threatened by Overharvesting and Climate Change. Abstract Reference genomes are key resources in biodiversity conservation. Yet, sequencing efforts are not evenly distributed… Genome Biology and Evolution vol. 17, n° 2, ISBN: 1759-6653 Publisher: Society for Molecular Biology and Evolution Type: 10.1093/gbe/evae253
https://hal.science/hal-04935559
Modica Maria Vittoria, Leone Serena, Gerdol Marco, Greco Samuele, Aurelle Didier, Oliverio Marco, Fassio Giulia, El Koulali Khadija, Barrachina Célia & Dutertre Sebastien, 2025 — The proteotranscriptomic characterization of venom in the white seafan Eunicella singularis elucidates the evolution of Octocorallia arsenal. Open Biology vol. 15, n° 3, p. 250015 Publisher: Royal Society tex.hal_id: hal-04997735 tex.hal_version: v1
https://dx.doi.org/10.1098/rsob.250015
Ledoux Jean-Baptiste, Gomez-Garrido Jessica, Cruz Fernando, Camara Ferreira Francisco, Matos Ana, Sarropoulou Xenia, Ramirez-Calero Sandra, Aurelle Didier, Lopez-Sendino Paula, Grayson Natalie, Moore Bradley, Antunes Agostinho, Aguilera Laura, Gut Marta, Salces-Ortiz Judit et al., 2025 — Chromosome-level genome assembly and annotation of corallium rubrum : a mediterranean coral threatened by overharvesting and climate change. Genome Biology and Evolution vol. 17, n° 2, Publisher: Society for Molecular Biology and Evolution tex.hal_id: hal-04935559 tex.hal_version: v1
https://dx.doi.org/10.1093/gbe/evae253
Aurelle D., August 2024 — Scripts for filtering SNPs from RAD sequencing; analysis of Mediterranean octocorals along a depth gradient. , , Type: Scripts and results of the filtering of SNPs for the analysis of genomic differentiation along depths in Mediterranean octocorals. Output from an R Markdown
https://hal.science/hal-04622544
Jiménez-Mejías Pedro, Manzano Saúl, Gowda Vinita, Krell Frank-Thorsten, Lin Mei-Ying, Martín-Bravo Santiago, Martín-Torrijos Laura, Nieto Feliner Gonzalo, Mosyakin Sergei, Naczi Robert, Acedo Carmen, Álvarez Inés, Crisci Jorge, Luceño Garcés Modesto, Manning John et al., June 2024 — Protecting stable biological nomenclatural systems enables universal communication: A collective international appeal. Abstract The fundamental value of universal nomenclatural systems in biology is that they enable unambiguous scientific… Bioscience , biae043, biae043 Publisher: Oxford University Press (OUP) tex.hal_id: hal-04662116 tex.hal_version: v1
ISSN
0006-3568, 1525-3244
https://dx.doi.org/10.1093/biosci/biae043
Siuda Amy N. S., Blanfuné Aurélie, Dibner Skye, Verlaque Marc, Boudouresque Charles-François, Connan Solène, Goodwin Deborah S., Stiger-Pouvreau Valérie, Viard Frédérique, Rousseau Florence, Michotey Valérie, Schell Jeffrey M., Changeaux Thomas, Aurelle Didier & Thibaut Thierry, May 2024 — Morphological and molecular characters differentiate common morphotypes of atlantic holopelagic sargassum. Phycology vol. 4, n° 2, p. 256-275 Publisher: Wiley tex.hal_id: mnhn-04572926 tex.hal_version: v1
ISSN
2673-9410
https://dx.doi.org/10.3390/phycology4020014
Reynes Lauric, Fouqueau Louise, Aurelle D., Mauger Stéphane, Destombe Christophe & Valero Myriam, April 2024 — Temporal genomics help in deciphering neutral and adaptive patterns in the contemporary evolution of kelp populations. The impact of climate change on populations will be contingent upon their contemporary adaptive evolution. In this study, we… Journal of Evolutionary Biology , , ISBN: 1010-061X Publisher: Wiley Type: 10.1093/jeb/voae048
https://dx.doi.org/10.1093/jeb/voae048
Le Gall Line, Corbari Laure, Aurelle D., Bay-Nouailhat Anne, Bay-Nouailhat Wilfried, de Bettignies Thibaut, Duchaud Éric, Marani Gilberto & Bouchet Philippe, January 2024 — Bilan scientifiqueLA PLANÈTE REVISITÉE EN CORSE, Volet marin 2019-2021. Le projet La Planète Revisitée en Corse est mené par le Muséum national d’Histoire naturelle (MNHN), la Collectivité de Corse … , , p. 189
https://mnhn.hal.science/mnhn-04552677
Le Gall Line, Corbari Laure, Aurelle Didier, Bay-Nouailhat Anne, Bay-Nouailhat Wilfried, De Bettignies Thibaut, Duchaud Éric, Marani Gilberto & Bouchet Philippe, 2024 — A PLANÈTE REVISITÉE EN CORSE : Volet marin 2019-2021. , , p. 189
Denoeud France, Godfroy Olivier, Cruaud Corinne, Heesch Svenja, Nehr Zofia, Tadrent Nachida, Couloux Arnaud, Brillet-Guéguen Loraine, Delage Ludovic, Mckeown Dean, Motomura Taizo, Sussfeld Duncan, Fan Xiao, Mazéas Lisa, Terrapon Nicolas et al., 2024 — Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems. Cell vol. 187, n° 24, 6943–6965.e39
ISSN
00928674
https://dx.doi.org/10.1016/j.cell.2024.10.049
Le Gall Line, Corbari Laure, Aurelle D., Bay-Nouailhat Anne, Bay-Nouailhat Wilfried, de Bettignies Thibaut, Duchaud Éric, Marani Gilberto & Bouchet Philippe, January 2024 — Bilan scientifiqueLA PLANÈTE REVISITÉE EN CORSE. , , p. 189 tex.hal_id: mnhn-04552677 tex.hal_version: v1
https://mnhn.hal.science/mnhn-04552677
Aurelle Didier, Haguenauer Anne, Blaise Chloé, Reynes Lauric, Arnaud-Haond Sophie, Boavida Joana, Cabau Cédric, Klopp Christophe, Lundalv Tomas, Noûs Camille, Sartoretto Stéphane, Wienberg Claudia, Jiménez Carlos & Orejas Covadonga, 2024 — On the specific status of eastern Mediterranean Dendrophyllia corals (Cnidaria, Anthozoa): Genetic characterization and speciation scenarios. Zoologica Scripta vol. 53, n° 2, p. 235-247 Publisher: Wiley tex.hal_id: hal-04354995 tex.hal_version: v1
https://dx.doi.org/10.1111/zsc.12643
Aurelle D., Haguenauer A, Bally M., Zuberer F, Guillemain D., Ledoux J.b., Sartoretto S., Cabau C., Lapeyre R., Chaoui L, Kara H, Samadi S. & Pontarotti P, 2024 — Symbiosis, hybridization and speciation in Mediterranean octocorals (Octocorallia, Eunicellidae). BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY , , p. 1-75
https://goo.gl/scholar/hHCPf6
Denoeud France, Godfroy Olivier, Cruaud Corinne, Heesch Svenja, Nehr Zofia, Tadrent Nachida, Couloux Arnaud, Brillet-Guéguen Loraine, Delage Ludovic, Mckeown Dean, Motomura Taizo, Sussfeld Duncan, Fan Xiao, Mazéas Lisa, Terrapon Nicolas et al., 2024 — Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems. Brown seaweeds are keystone species of coastal ecosystems, often forming extensive underwater forests, and are under… Cell , , ISBN: 0092-8674 Publisher: Elsevier Type: 10.1016/j.cell.2024.10.049
https://hal.science/hal-04794231
Sartoretto S., Ledoux Jb, Gueret E., Guillemain D., Ravel C., Moirand L. & Aurelle D., November 2023 — Ecological and genomic characterization of a remarkable natural heritage: a mesophotic ‘giant’ Paramuricea clavata forest. Paramuricea clavata is an ecosystem engineer, structuring hard bottom communities in the Mediterranean Sea, from 10 to 200 m… Marine Ecology Progress Series vol. SHIFT, , ISBN: 0171-8630 Publisher: Inter Research Type: 10.3354/meps14427
https://hal.science/hal-04342474
Oury Nicolas, Noël Cyril, Mona Stefano, Aurelle Didier & Magalon Hélène, May 2023 — From genomics to integrative species delimitation? The case study of the Indo-Pacific Pocillopora corals. Molecular Phylogenetics and Evolution vol. 184, , p. 107803 Pages: 107803 Type: 10.1016/j.ympev.2023.107803
ISSN
10557903
https://dx.doi.org/10.1016/j.ympev.2023.107803
Zaharias Paul, Lemoine Frédéric & Gascuel Olivier, 2023 — Robustness of Felsenstein’s versus Transfer Bootstrap Supports with respect to Taxon Sampling. Abstract The bootstrap method is based on resampling sequence alignments and re-estimating trees. Felsenstein’s bootstrap… Systematic Biology vol. 72, n° 6, syad052
ISSN
1063-5157, 1076-836X
https://dx.doi.org/10.1093/sysbio/syad052
Coelho Márcio a G, Pearson Gareth A, Boavida Joana R H, Paulo Diogo, Aurelle Didier, Arnaud-haond Sophie, Gómez-gras Daniel, Bensoussan Nathaniel, López-sendino Paula, Cerrano Carlo, Kipson Silvija, Bakran-petricioli Tatjana, Ferretti Eliana, Linares Cristina, Garrabou Joaquim et al., 2023 — Not out of the Mediterranean: Atlantic populations of the gorgonian Paramuricea clavata are a separate sister species under further lineage diversification. Ecology and Evolution vol. 13, n° 1, Publisher: Wiley Open Access tex.hal_id: hal-03962833 tex.hal_version: v1
https://dx.doi.org/10.1002/ece3.9740