Puillandre Nicolas, Miralles Aurélien, Brouillet Sophie, Fedosov Alexander, Fischell Frank, Patmanidis Stefanos & Vences Miguel, 2024 — « Species Delimitation and Exploration of Species Partitions with ASAP and LIMES » in DNA Barcoding.. vol. 2744, , p. 313-334 Series Title: Methods in Molecular Biology
ISBN
978-1-07-163580-3 978-1-07-163581-0
https://dx.doi.org/10.1007/978-1-0716-3581-0_20
Miralles Aurelien, Ducasse Jacques, Brouillet Sophie, Flouri Tomas, Fujisawa Tomochika, Kapli Paschalia, Knowles L. Lacey, Kumari Sangeeta, Stamatakis Alexandros, Sukumaran Jeet, Lutteropp Sarah, Vences Miguel & Puillandre Nicolas, 2022 — SPART : A versatile and standardized data exchange format for species partition information. Molecular Ecology Resources vol. 22, n° 1, p. 430-438
ISSN
1755-098X
https://dx.doi.org/10.1111/1755-0998.13470
Vences Miguel, Miralles Aurélien, Brouillet Sophie, Ducasse Jacques, Fedosov Alexander, Kharchev Vladimir, Kostadinov Ivaylo, Kumari Sangeeta, Patmanidis Stefanos, Scherz Mark, Puillandre Nicolas & Renner Susanne, July 2021 — iTaxoTools 0.1: Kickstarting a specimen-based software toolkit for taxonomists. While powerful and user-friendly software suites exist for phylogenetics, and an impressive cybertaxomic infrastructure of… Megataxa vol. 6, n° 2, p. 77-92 ISBN: 2703-3082 Publisher: Magnolia Press Type: 10.11646/MEGATAXA.6.2.1
ISSN
2703-3090, 2703-3082
https://dx.doi.org/10.11646/megataxa.6.2.1
Vences Miguel, Miralles Aurélien, Brouillet Sophie, Ducasse Jacques, Fedosov Alexander, Kharchev Vladimir, Kostadinov Ivaylo, Kumari Sangeeta, Patmanidis Stefanos, Scherz Mark, Puillandre Nicolas & Renner Susanne, 2021 — iTaxoTools 0.1: Kickstarting a specimen-based software toolkit for taxonomists. While powerful and user-friendly software suites exist for phylogenetics, and an impressive cybertaxomic infrastructure of… Megataxa vol. 6, n° 2, p. 77-92 ISBN: 2703-3082 Publisher: Magnolia Press Type: 10.11646/MEGATAXA.6.2.1
https://hal.archives-ouvertes.fr/hal-03321424
Puillandre Nicolas, Brouillet Sophie & Achaz Guillaume, 2020 — ASAP : assemble species by automatic partitioning. Molecular Ecology Resources vol. 21, n° 2, 1755–0998.13281
ISSN
1755-098X, 1755-0998
https://dx.doi.org/10.1111/1755-0998.13281
Abdi Basma, Nguyen Thuy, Brouillet Sophie, Desire Nathalie, Sayon Sophie, Wirden Marc, Jary Aude, Achaz Guillaume, Assoumou Lambert, Palich Romain, Simon Anne, Tubiana Roland, Valantin Marc-Antoine, Katlama Christine, Calvez Vincent et al., 2020 — No HIV-1 molecular evolution on long-term antiretroviral therapy initiated during primary HIV-1 infection.. AIDS (London, England) vol. 34, n° 12, p. 1745-1753
ISSN
1473-5571 0269-9370
https://dx.doi.org/10.1097/QAD.0000000000002629
Gonçalves Isabelle R., Brouillet Sophie, Soulié Marie-Christine, Gribaldo Simonetta, Sirven Catherine, Charron Noémie, Boccara Martine & Choquer Mathias, November 2016 — Genome-wide analyses of chitin synthases identify horizontal gene transfers towards bacteria and allow a robust and unifying classification into fungi. BMC evolutionary biology vol. 16, n° 1, p. 252
ISSN
1471-2148
https://dx.doi.org/10.1186/s12862-016-0815-9
Suez Marie, Behdenna Abdelkader, Brouillet Sophie, Graça Paula, Higuet Dominique & Achaz Guillaume, 2016 — MicNeSs : genotyping microsatellite loci from a collection of (NGS) reads. Molecular Ecology Resources vol. 16, n° 2, p. 524-533
ISSN
1755098X
https://dx.doi.org/10.1111/1755-0998.12467
Dettaï Agnès, Gallut Cyril, Brouillet Sophie, Pothier Joël, Lecointre Guillaume, Lautrédou Anne-Claire, Monniot Françoise, Couloux Arnaud & Debruyne Régis, 2013 — "Results and limits of COI barcoding for the exploration of the southern ocean biodiversity and evolution: are mitogenomes the answer?". 2e Colloque de génomique environnementale, Rennes.. , ,
Dettaï Agnès, Debruyne Régis, Gallut Cyril, Brouillet Sophie, Couloux Arnaud, Ameziane Nadia, Monniot Françoise & Lecointre Guillaume, 2013 — "La mitogénomique, un nouvel outil pour l’exploration de la biodiversité et de l’évolution dans l’Océan Austral." 9e Journées Scientifiques du CNFRA.. Institut océanographique. Paris. , ,
Dettaï Agnès, Gallut Cyril, Brouillet Sophie, Pothier Joël, Lecointre Guillaume, Lautrédou Anne-Claire, Monniot Françoise, Couloux Arnaud & Debruyne Régis, 2013 — "Results and limits of COI barcoding for the exploration of the southern ocean biodiversity and evolution: are mitogenomes the answer?. Colloque de génomique environnementale, Rennes. , ,
Puillandre Nicolas, Lambert A., Brouillet S. & Achaz G., April 2012 — ABGD , Automatic Barcode Gap Discovery for primary species delimitation: ABGD, AUTOMATIC BARCODE GAP DISCOVERY. Molecular Ecology vol. 21, n° 8, p. 1864-1877
ISSN
09621083
https://dx.doi.org/10.1111/j.1365-294X.2011.05239.x
Dettaï Agnes, Gallut Cyril, Brouillet Sophie, Pothier Joel, Lecointre Guillaume & Debruyne Régis, 2012 — Conveniently Pre-Tagged and Pre-Packaged: Extended Molecular Identification and Metagenomics Using Complete Metazoan Mitochondrial Genomes. PLos One vol. 7, n° 12, e51263
ISSN
1932-6203
https://dx.doi.org/10.1371/journal.pone.0051263