Barbier Maxime & Wirth Thierry, 2017 — « The Evolutionary History, Demography, and Spread of the <span class="nocase">Mycobacterium tuberculosis</span> Complex » in Tuberculosis and the Tubercle Bacillus.. , , p. 453-473
ISBN
978-1-68367-083-4 978-1-55581-955-2
http://doi.wiley.com/10.1128/9781555819569.ch20
Stegger M., Wirth T., Andersen P. S., Skov R. L., DeGrassi A., Simoes P. M., Tristan A., Petersen A., Aziz M., Kiil K., Cirkovic I., Udo E. E., del Campo R., Vuopio-Varkila J., Ahmad N. et al., 2014 — Origin and evolution of European community-acquired methicillin-resistant Staphylococcus aureus. MBio vol. 5, , e01044--14
ISSN
2150-7511 (Electronic)
https://dx.doi.org/10.1128/mBio.01044-14
Wielgoss S., Gilabert A., Meyer A. & Wirth T., 2014 — Introgressive hybridization and latitudinal admixture clines in North Atlantic eels. BMC Evolutionary Biology vol. 14, , p. 61
ISSN
1471-2148 (Electronic) 1471-2148 (Linking)
https://dx.doi.org/10.1186/1471-2148-14-61
Lalis A. & Wirth T., 2017 — « Des souris et des hommes: Histoire évolutive de la Fièvre de Lassa » in Evolution and Biodiversity.. , , dir. ISTE Editions
Gilabert A., Rasigade J.-P. & Wirth Thierry, 2017 — « Microbes as tracers of past human demography and migrations » in Genetics and Evolution of Infectious Diseases, 2nd Edition.. , , p. 141-165
Franssen Susanne U, Durrant Caroline, Stark Olivia, Moser Bettina, Downing Tim, Imamura Hideo, Dujardin Jean-Claude, Sanders Mandy J, Mauricio Isabel, Miles Michael A, Schnur Lionel F, Jaffe Charles L, Nasereddin Abdelmajeed, Schallig Henk, Yeo Matthew et al., 2020 — Global genome diversity of the Leishmania donovani complex. eLife vol. 9, , e51243
ISSN
2050-084X
https://dx.doi.org/10.7554/eLife.51243
Kohl Thomas A., Kranzer Katharina, Andres Sönke, Wirth Thierry, Niemann Stefan & Moser Irmgard, 2020 — Population Structure of Mycobacterium bovis in Germany: a Long-Term Study Using Whole-Genome Sequencing Combined with Conventional Molecular Typing Methods. Journal of Clinical Microbiology vol. 58, n° 11, e01573–20, /jcm/58/11/JCM.01573–20.atom
ISSN
0095-1137, 1098-660X
https://dx.doi.org/10.1128/JCM.01573-20
Wirth Thierry, July 2020 — Applied phyloepidemiology: Detecting drivers of pathogen transmission from genomic signatures using density measures. AbstractUnderstanding the driving forces of an epidemic is key to inform intervention strat- egies against it. Correlating… Evolutionary Applications vol. 13, n° 6, p. 1513-1525 ISBN: 1752-4563 Publisher: Blackwell Type: 10.1111/eva.12991
ISSN
1752-4571, 1752-4571
https://dx.doi.org/10.1111/eva.12991
Wirth Thierry, Bergot Marine, Rasigade Jean-Philippe, Pichon Bruno, Barbier Maxime, Martins-Simoes Patricia, Jacob Laurent, Pike Rachel, Tissieres Pierre, Picaud Jean-Charles, Kearns Angela, Supply Philip, Butin Marine & Laurent Frédéric, May 2020 — Niche specialization and spread of Staphylococcus capitis involved in neonatal sepsis. Nature Microbiology vol. 5, n° 5, p. 735-745
ISSN
2058-5276
https://dx.doi.org/10.1038/s41564-020-0676-2
Moura Alexandra, Lefrancq Noémie, Leclercq Alexandre, Wirth Thierry, Borges Vítor, Gilpin Brent, Dallman Timothy, Frey Joachim, Franz Eelco, Nielsen Eva, Thomas Juno, Pightling Arthur, Howden Benjamin, Tarr Cheryl, Gerner-Smidt Peter et al., December 2020 — Emergence and global spread of Listeria monocytogenes main clinical clonal complex. Retracing microbial emergence and spread is essential to understanding the evolution and dynamics of pathogens. The bacterial… Science Advances vol. 7, n° 49, eabj9805 Type: 10.1101/2020.12.18.423387
ISSN
2375-2548
https://dx.doi.org/10.1126/sciadv.abj9805
Alili Rohia, Belda Eugeni, Le Phuong, Wirth Thierry, Zucker Jean-Daniel, Prifti Edi & Clément Karine, 2021 — Exploring Semi-Quantitative Metagenomic Studies Using Oxford Nanopore Sequencing: A Computational and Experimental Protocol. Genes vol. 12, n° 10, p. 1496
ISSN
2073-4425
https://dx.doi.org/10.3390/genes12101496
Tevell Staffan, Baig Sharmin, Hellmark Bengt, Martins Simoes Patricia, Wirth Thierry, Butin Marine, Nilsdotter-Augustinsson Åsa, Söderquist Bo & Stegger Marc, 2020 — Presence of the neonatal Staphylococcus capitis outbreak clone (NRCS-A) in prosthetic joint infections. Scientific Reports vol. 10, n° 1, p. 22389
ISSN
2045-2322
https://dx.doi.org/10.1038/s41598-020-79225-x
Huber B., Whibley A., Poul Y. L., Navarro N., Martin A., Baxter S., Shah A., Gilles B., Wirth T., McMillan W. O. & Joron M., 2015 — Conservatism and novelty in the genetic architecture of adaptation in Heliconius butterflies. Heredity vol. 114, n° 5, p. 515-524
ISSN
0018-067X, 1365-2540
https://dx.doi.org/10.1038/hdy.2015.22
Merker Matthias, Blin Camille, Mona Stefano, Duforet-Frebourg Nicolas, Lecher Sophie, Willery Eve, Blum Michael G B, Rüsch-Gerdes Sabine, Mokrousov Igor, Aleksic Eman, Allix-Béguec Caroline, Antierens Annick, Augustynowicz-Kopeć Ewa, Ballif Marie, Barletta Francesca et al., 2015 — Evolutionary history and global spread of the Mycobacterium tuberculosis Beijing lineage. Nature Genetics vol. 47, n° 3, p. 242-249
ISSN
1061-4036, 1546-1718
https://dx.doi.org/10.1038/ng.3195
Wirth Thierry, 2015 — Massive lineage replacements and cryptic outbreaks of Salmonella Typhi in eastern and southern Africa. Nature Genetics vol. 47, n° 6, p. 565-567
ISSN
1061-4036
https://dx.doi.org/10.1038/ng.3318
Glaser Philippe, Martins-Simões Patrícia, Villain Adrien, Barbier Maxime, Tristan Anne, Bouchier Christiane, Ma Laurence, Bes Michele, Laurent Frederic, Guillemot Didier, Wirth Thierry & Vandenesch François, 2016 — Demography and intercontinental spread of the USA300 community-acquired methicillin-resistant Staphylococcus aureus lineage. mBio vol. 7, n° 1, e02183--15
ISSN
2150-7511
https://dx.doi.org/10.1128/mBio.02183-15
Sapriel G., Konjek J., Orgeur M., Bouri L., Frezal L., Roux A. L., Dumas E., Brosch R., Bouchier C., Brisse S., Vandenbogaert M., Thiberge J. M., Caro V., Ngeow Y. F., Tan J. L. et al., 2016 — Genome-wide mosaicism within Mycobacterium abscessus: evolutionary and epidemiological implications. BMC Genomics vol. 17, n° 1, p. 118
ISSN
1471-2164 (Electronic) 1471-2164 (Linking)
https://dx.doi.org/10.1186/s12864-016-2448-1
Alhaj Hussen K., Vu Manh T. P., Guimiot F., Nelson E., Chabaane E., Delord M., Barbier M., Berthault C., Dulphy N., Alberdi A. J., Burlen-Defranoux O., Socie G., Bories J. C., Larghero J., Vanneaux V. et al., 2017 — Molecular and Functional Characterization of Lymphoid Progenitor Subsets Reveals a Bipartite Architecture of Human Lymphopoiesis. Immunity vol. 47, n° 4, 680–696 e8
ISSN
1097-4180 (Electronic) 1074-7613 (Linking)
https://dx.doi.org/10.1016/j.immuni.2017.09.009