Barbier Maxime & Wirth Thierry, 2017 — « The Evolutionary History, Demography, and Spread of the <span class="nocase">Mycobacterium tuberculosis</span> Complex » in Tuberculosis and the Tubercle Bacillus.. , , p. 453-473
ISBN
978-1-68367-083-4 978-1-55581-955-2
http://doi.wiley.com/10.1128/9781555819569.ch20
Barilar Ivan, Fernando Tatiana, Utpatel Christian, Abujate Cláudio, Madeira Carla Maria, José Benedita, Mutaquiha Claudia, Kranzer Katharina, Niemann Tanja, Ismael Nalia, De Araujo Leonardo, Wirth Thierry, Niemann Stefan & Viegas Sofia, 2024 — Emergence of bedaquiline-resistant tuberculosis and of multidrug-resistant and extensively drug-resistant Mycobacterium tuberculosis strains with rpoB Ile491Phe mutation not detected by Xpert MTB/RIF in Mozambique: a retrospective observational study. The Lancet Infectious Diseases vol. 24, n° 3, p. 297-307
ISSN
14733099
https://dx.doi.org/10.1016/S1473-3099(23)00498-X
Auganova Dana, Atavliyeva Sabina, Gharbi Nour, Zholdybayeva Elena, Skiba Yuri, Akisheva Akmaral, Tsepke Anna, Alenova Arike, Guyeux Christophe, Wirth Thierry, Sola Christophe & Tarlykov Pavel, 2025 — Genomic characterization and epidemiology of Mycobacterium tuberculosis lineage 2 isolates from Kazakhstan. Scientific Reports vol. 15, n° 1, p. 37715
ISSN
2045-2322
https://dx.doi.org/10.1038/s41598-025-22485-2
Stegger M., Wirth T., Andersen P. S., Skov R. L., DeGrassi A., Simoes P. M., Tristan A., Petersen A., Aziz M., Kiil K., Cirkovic I., Udo E. E., del Campo R., Vuopio-Varkila J., Ahmad N. et al., 2014 — Origin and evolution of European community-acquired methicillin-resistant Staphylococcus aureus. MBio vol. 5, , e01044--14
ISSN
2150-7511 (Electronic)
https://dx.doi.org/10.1128/mBio.01044-14
Wielgoss S., Gilabert A., Meyer A. & Wirth T., 2014 — Introgressive hybridization and latitudinal admixture clines in North Atlantic eels. BMC Evolutionary Biology vol. 14, , p. 61
ISSN
1471-2148 (Electronic) 1471-2148 (Linking)
https://dx.doi.org/10.1186/1471-2148-14-61
Lalis A. & Wirth T., 2017 — « Des souris et des hommes: Histoire évolutive de la Fièvre de Lassa » in Evolution and Biodiversity.. , , dir. ISTE Editions
Huber B., Whibley A., Poul Y. L., Navarro N., Martin A., Baxter S., Shah A., Gilles B., Wirth T., McMillan W. O. & Joron M., 2015 — Conservatism and novelty in the genetic architecture of adaptation in Heliconius butterflies. Heredity vol. 114, n° 5, p. 515-524
ISSN
0018-067X, 1365-2540
https://dx.doi.org/10.1038/hdy.2015.22
Merker Matthias, Blin Camille, Mona Stefano, Duforet-Frebourg Nicolas, Lecher Sophie, Willery Eve, Blum Michael G B, Rüsch-Gerdes Sabine, Mokrousov Igor, Aleksic Eman, Allix-Béguec Caroline, Antierens Annick, Augustynowicz-Kopeć Ewa, Ballif Marie, Barletta Francesca et al., 2015 — Evolutionary history and global spread of the Mycobacterium tuberculosis Beijing lineage. Nature Genetics vol. 47, n° 3, p. 242-249
ISSN
1061-4036, 1546-1718
https://dx.doi.org/10.1038/ng.3195
Wirth Thierry, 2015 — Massive lineage replacements and cryptic outbreaks of Salmonella Typhi in eastern and southern Africa. Nature Genetics vol. 47, n° 6, p. 565-567
ISSN
1061-4036
https://dx.doi.org/10.1038/ng.3318
Glaser Philippe, Martins-Simões Patrícia, Villain Adrien, Barbier Maxime, Tristan Anne, Bouchier Christiane, Ma Laurence, Bes Michele, Laurent Frederic, Guillemot Didier, Wirth Thierry & Vandenesch François, 2016 — Demography and intercontinental spread of the USA300 community-acquired methicillin-resistant Staphylococcus aureus lineage. mBio vol. 7, n° 1, e02183--15
ISSN
2150-7511
https://dx.doi.org/10.1128/mBio.02183-15
Sapriel G., Konjek J., Orgeur M., Bouri L., Frezal L., Roux A. L., Dumas E., Brosch R., Bouchier C., Brisse S., Vandenbogaert M., Thiberge J. M., Caro V., Ngeow Y. F., Tan J. L. et al., 2016 — Genome-wide mosaicism within Mycobacterium abscessus: evolutionary and epidemiological implications. BMC Genomics vol. 17, n° 1, p. 118
ISSN
1471-2164 (Electronic) 1471-2164 (Linking)
https://dx.doi.org/10.1186/s12864-016-2448-1
Alhaj Hussen K., Vu Manh T. P., Guimiot F., Nelson E., Chabaane E., Delord M., Barbier M., Berthault C., Dulphy N., Alberdi A. J., Burlen-Defranoux O., Socie G., Bories J. C., Larghero J., Vanneaux V. et al., 2017 — Molecular and Functional Characterization of Lymphoid Progenitor Subsets Reveals a Bipartite Architecture of Human Lymphopoiesis. Immunity vol. 47, n° 4, 680–696 e8
ISSN
1097-4180 (Electronic) 1074-7613 (Linking)
https://dx.doi.org/10.1016/j.immuni.2017.09.009
Rasigade Jean-Philippe, Barbier Maxime, Dumitrescu Oana, Pichat Catherine, Carret Gérard, Ronnaux-Baron Anne-Sophie, Blasquez Ghislaine, Godin-Benhaim Christine, Boisset Sandrine, Carricajo Anne, Jacomo Véronique, Fredenucci Isabelle, Pérouse de Montclos Michèle, Flandrois Jean-Pierre, Ader Florence et al., 2017 — Strain-specific estimation of epidemic success provides insights into the transmission dynamics of tuberculosis. Scientific Reports vol. 7, , p. 45326
https://dx.doi.org/10.1038/srep45326
Barbier M., Dumitrescu O., Pichat C., Carret G., Ronnaux-Baron A. S., Blasquez G., Godin-Benhaim C., Boisset S., Carricajo A., Jacomo V., Fredenucci I., Perouse de Montclos M., Genestet C., Flandrois J. P., Ader F. et al., 2018 — Changing patterns of human migrations shaped the global population structure of Mycobacterium tuberculosis in France. Scientific reports vol. 8, n° 1, p. 5855
ISSN
2045-2322 (Electronic) 2045-2322 (Linking)
https://dx.doi.org/10.1038/s41598-018-24034-6
Gustave C. A., Tristan A., Martins-Simoes P., Stegger M., Benito Y., Andersen P. S., Bes M., Le Hir T., Diep B. A., Uhlemann A. C., Glaser P., Laurent F., Wirth T. & Vandenesch F., 2018 — Demographic fluctuation of community-acquired antibiotic-resistant Staphylococcus aureus lineages: potential role of flimsy antibiotic exposure. Isme Journal vol. 12, n° 8, p. 1879-1894
ISSN
1751-7370 (Electronic) 1751-7362 (Linking)
https://dx.doi.org/10.1038/s41396-018-0110-4
Kramer R., Sabatier M., Wirth T., Pichon M., Lina B., Schuffenecker I. & Josset L., 2018 — Molecular diversity and biennial circulation of enterovirus D68: a systematic screening study in Lyon, France, 2010 to 2016. Eurosurveillance vol. 23, n° 37,
ISSN
1560-7917 (Electronic) 1025-496X (Linking)
https://dx.doi.org/10.2807/1560-7917.ES.2018.23.37.1700711
Merker M., Barbier M., Cox H., Rasigade J. P., Feuerriegel S., Kohl T. A., Diel R., Borrell S., Gagneux S., Nikolayevskyy V., Andres S., Nubel U., Supply P., Wirth T. & Niemann S., October 2018 — Compensatory evolution drives multidrug-resistant tuberculosis in Central Asia. eLife vol. 7, ,
ISSN
2050-084X (Electronic) 2050-084X (Linking)
https://dx.doi.org/10.7554/eLife.38200
Quarrell S. R., Arabi J., Suwalski A., Veuille M., Wirth T. & Allen G. R., 2018 — The invasion biology of the invasive earwig, Forficula auricularia in Australasian ecosystems. Biological Invasions vol. 20, n° 6, p. 1553-1565
Rasigade J. P., Hollandt F. & Wirth T., 2018 — Genes under positive selection in the core genome of pathogenic Bacillus cereus group members. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases vol. 65, , p. 55-64
ISSN
1567-7257 (Electronic) 1567-1348 (Linking)
https://dx.doi.org/10.1016/j.meegid.2018.07.009