, 2024 — Most genetic roots of fungal and animal aging are hundreds of millions of years old according to phylostratigraphy analyses of aging networks.. GeroScience , ,
, April 2023 — Large-Scale Identification of Known and Novel RRNPP Quorum-Sensing Systems by RRNPP_Detector Captures Novel Features of Bacterial, Plasmidic, and Viral Coevolution. Abstract Gram-positive Firmicutes bacteria and their mobile genetic elements (plasmids and bacteriophages) encode peptide-based… Molecular Biology and Evolution vol. 40, n° 4, ISBN: 0737-4038 Publisher: Oxford University Press (OUP) Type: 10.1093/molbev/msad062
, November 2019 — Search for unknown environmental sequences of medical/biological interest using large sequence similarity networks, Recherche de séquences environnementales inconnues d’intérêt médical/biologique par l’utilisation de grands réseaux de similarité de séquen. The objective of this thesis was to identify as yet unknown microorganisms present in various environments and to characterize… , ,
, 2022 — Proximate Drivers of Population-Level Lizard Gut Microbial Diversity: Impacts of Diet, Insularity, and Local Environment. Microorganisms vol. 10, n° 8, p. 1550
ISSN
2076-2607
, 2019 — Introducing trait networks to elucidate the fluidity of organismal evolution using palaeontological data. Genome Biology and Evolution vol. 11, n° 9, p. 2653-2665
ISSN
1759-6653
, 2019 — « The Methodology Behind Network Thinking: Graphs to Analyze Microbial Complexity and Evolution » in Evolutionary Genomics.. vol. 1910, , dir. Springer New York p. 271-308
ISBN
978-1-4939-9073-3 978-1-4939-9074-0
, 2020 — Rich repertoire of quorum sensing protein coding sequences in CPR and DPANN associated with interspecies and interkingdom communication. msystems vol. 5, n° 5, e00414–20 tex.article-number: e00414-20
tex.orcid-numbers: Lannes, Romain/0000-0002-6672-1762
tex.unique-id: ISI:000579368300039
ISSN
2379-5077
, 2018 — Topological support and data quality can only be assessed through multiple tests in reviewing Blattodea phylogeny. Molecular Phylogenetics and Evolution vol. 128, , p. 112-122
ISSN
1055-7903
, 2019 — Carbon Fixation by Marine Ultrasmall Prokaryotes. Highlighted in Contribution of Ultra-Small Microbes to Global Carbon Cycles.. Genome Biology and Evolution vol. 11, n° 4, p. 1166-1177
ISSN
1759-6653
, 2021 — The Epistemic Revolution Induced by Microbiome Studies: An Interdisciplinary View. Biology vol. 10, n° 7, p. 651
ISSN
2079-7737
, 2020 — Marine Ultrasmall Prokaryotes Likely Affect the Cycling of Carbon, Methane, Nitrogen, and Sulfur. Genome Biology and Evolution vol. 13, n° 1, evaa261
ISSN
1759-6653
, 2021 — Beyond arbitrium: identification of a second communication system in Bacillus phage phi3T that may regulate host defense mechanisms. Isme Journal vol. 15, n° 2, p. 545-549
ISSN
1751-7362
, 2020 — « Microbial Communication Networks: Sketching a Method for Analyzing the Communication of Bacteriophages Inside Environmental Communities » in Biocommunication of Phages.. , , dir. Springer International Publishing p. 163-181
ISBN
978-3-030-45884-3 978-3-030-45885-0
, 2021 — Retracing lineage history: time to emphasize genetic turn-over Authorship. Trends in Microbiology vol. 29, n° 11, p. 957-958 Publisher: Elsevier tex.hal_id: hal-03341509 tex.hal_version: v1
ISSN
0966-842X
, November 2019 — Search for unknown environmental sequences of medical/biological interest using large sequence similarity networks, Recherche de séquences environnementales inconnues d’intérêt médical/biologique par l’utilisation de grands réseaux de similarité de.... The objective of this thesis was to identify as yet unknown
microorganisms present in various environments and to characterize… , , X
, November 2021 — Hundreds of out-of-frame remodelled gene families in the E. coli pangenome. Molecular Biology and Evolution , , msab329 Publisher: Oxford University Press (OUP) tex.hal_id: hal-03451955 tex.hal_version: v1
, October 2021 — RRNPP_detector: a tool to detect RRNPP quorum sensing systems in chromosomes, plasmids and phages of gram-positive bacteria. ABSTRACT Gram-positive bacteria (e.g. Firmicutes) and their mobile genetic elements (plasmids, bacteriophages) encode peptide… , , Type: 10.1101/2021.08.18.456871
, October 2021 — Large-scale identification of viral quorum sensing systems reveals density-dependent sporulation-hijacking mechanisms in bacteriophages. Communication between viruses supported by quorum sensing systems (QSSs) were found to optimize the fitness of temperate… , , Type: 10.1101/2021.07.15.452460
, 2020 — « Microbial Communication Networks: Sketching a Method for Analyzing the Communication of Bacteriophages Inside Environmental Communities » in Biocommunication of Phages.. , , p. 163-181
ISBN
978-3-030-45884-3 978-3-030-45885-0
, 2022 — Network analyses unveil ageing-associated pathways evolutionarily conserved from fungi to animals. GeroScience , ,
ISSN
2509-2715, 2509-2723