Arroyo Alicia S, Iannes Romain, Bapteste Eric & Ruiz-Trillo Iñaki, 2020 — Gene Similarity Networks Unveil a Potential Novel Unicellular Group Closely Related to Animals from the Tara Oceans Expedition. Genome Biology and Evolutionvol. 12, n° 9, p. 1664-1678
Bernard Charles, Lopez Philippe & Bapteste Eric, 2020 — « Microbial Communication Networks: Sketching a Method for Analyzing the Communication of Bacteriophages Inside Environmental Communities » in Biocommunication of Phages.. , , dir. Springer International Publishingp. 163-181
Bapteste Eric & Papale Francois, 2021 — Modeling the evolution of interconnected processes: It is the song and the singers Tracking units of selection with interaction networks. BioEssays : news and reviews in molecular, cellular and developmental biologyvol. 43, n° 1, e2000077
Ocaña-Pallarès Eduard, Williams Tom A., López-Escardó David, Arroyo Alicia S., Pathmanathan Jananan S., Bapteste Eric, Tikhonenkov Denis V., Keeling Patrick J., Szöllősi Gergely J. & Ruiz-Trillo Iñaki, 2022 — Divergent genomic trajectories predate the origin of animals and fungi. Abstract
Animals and fungi have radically distinct morphologies, yet both evolved within the same eukaryotic supergroup:…Naturevol. 609, n° 7925, p. 1-7
Lannes Romain, Bapteste Éric & Lopez Philippe, November 2019 — Search for unknown environmental sequences of medical/biological interest using large sequence similarity networks, Recherche de séquences environnementales inconnues d’intérêt médical/biologique par l’utilisation de grands réseaux de similarité de.... The objective of this thesis was to identify as yet unknown
microorganisms present in various environments and to characterize… , , X
Watson Andrew K, Lopez Philippe & Bapteste Eric, November 2021 — Hundreds of out-of-frame remodelled gene families in the E. coli pangenome. Molecular Biology and Evolution , , msab329Publisher: Oxford University Press (OUP) tex.hal_id: hal-03451955 tex.hal_version: v1
Bernard Charles, Li Yanyan, Bapteste Eric & Lopez Philippe, October 2021 — RRNPP_detector: a tool to detect RRNPP quorum sensing systems in chromosomes, plasmids and phages of gram-positive bacteria. ABSTRACT Gram-positive bacteria (e.g. Firmicutes) and their mobile genetic elements (plasmids, bacteriophages) encode peptide… , , Type: 10.1101/2021.08.18.456871
Bernard Charles, Li Yanyan, Lopez Philippe & Bapteste Eric, October 2021 — Large-scale identification of viral quorum sensing systems reveals density-dependent sporulation-hijacking mechanisms in bacteriophages. Communication between viruses supported by quorum sensing systems (QSSs) were found to optimize the fitness of temperate… , , Type: 10.1101/2021.07.15.452460
Guillaume Bernard, Jérôme Teulière, Philippe Lopez, Eduardo Corel, François-Joseph Lapointe, Eric Bapteste & Corel Eduardo, October 2021 — For consideration as an Article in the Discoveries section of MBE Aging at evolutionary crossroads: longitudinal gene co-expression network analyses of proximal and ultimate causes of aging in bats. How, when and why do organisms, their tissues and their cells age remain challenging issues, although researchers have…Molecular Biology and Evolution , , ISBN: 0737-4038 Publisher: Oxford University Press (OUP) Type: 10.1093/molbev/msab302/6400255
Bernard Charles, Lopez Philippe & Bapteste Eric, 2020 — « Microbial Communication Networks: Sketching a Method for Analyzing the Communication of Bacteriophages Inside Environmental Communities » in Biocommunication of Phages.. , , p. 163-181
Bonnefous H, Teulière J, Lapointe FJ, Lopez P & Bapteste E, 2024 — Most genetic roots of fungal and animal aging are hundreds of millions of years old according to phylostratigraphy analyses of aging networks.. GEROSCIENCE , ,