Cassan Elodie, Arigon-Chifolleau Anne-Muriel, Mesnard Jean-Michel, Gross Antoine & Gascuel Olivier, octobre 2016 — Concomitant emergence of the antisense protein gene of HIV-1 and of the pandemic. Proceedings of the National Academy of Sciences of the United States of America vol. 113, n° 41, p. 11537-11542 WOS:000384886900068
ISSN
0027-8424
https://dx.doi.org/10.1073/pnas.1605739113
Gascuel Olivier & Steel Mike, avril 2016 — A ’Stochastic Safety Radius’ for Distance-Based Tree Reconstruction. Algorithmica vol. 74, n° 4, p. 1386-1403 WOS:000373640000007
ISSN
0178-4617
https://dx.doi.org/10.1007/s00453-015-0005-y
Binet Manuel, Gascuel Olivier, Scornavacca Celine, Douzery Emmanuel J. P. & Pardi Fabio, janvier 2016 — Fast and accurate branch lengths estimation for phylogenomic trees. Bmc Bioinformatics vol. 17, , p. 23 WOS:000367709000001
ISSN
1471-2105
https://dx.doi.org/10.1186/s12859-015-0821-8
To Thu-Hien, Jung Matthieu, Lycett Samantha & Gascuel Olivier, janvier 2016 — Fast Dating Using Least-Squares Criteria and Algorithms. Systematic Biology vol. 65, n° 1, p. 82-97 WOS:000369955500006
ISSN
1063-5157
https://dx.doi.org/10.1093/sysbio/syv068
Lefort Vincent, Desper Richard & Gascuel Olivier, octobre 2015 — FastME 2.0: A Comprehensive, Accurate, and Fast Distance-Based Phylogeny Inference Program. Molecular Biology and Evolution vol. 32, n° 10, p. 2798-2800 WOS:000361987100026
ISSN
0737-4038
https://dx.doi.org/10.1093/molbev/msv150
Mourad Raphael, Chevennet Francois, Dunn David T., Fearnhill Esther, Delpech Valerie, Asboe David, Gascuel Olivier & Hue Stephane, septembre 2015 — A phylotype-based analysis highlights the role of drug-naive HIV-positive individuals in the transmission of antiretroviral resistance in the UK. Aids vol. 29, n° 15, p. 1917-1925 WOS:000368492500001
ISSN
0269-9370
https://dx.doi.org/10.1097/QAD.0000000000000768
Gascuel Olivier & Steel Mike, 2014 — Predicting the Ancestral Character Changes in a Tree is Typically Easier than Predicting the Root State. Systematic Biology vol. 63, n° 3, p. 421-435 WOS:000334752600011
ISSN
1063-5157
https://dx.doi.org/10.1093/sysbio/syu010
Schaper Elke, Gascuel Olivier & Anisimova Maria, 2014 — Deep Conservation of Human Protein Tandem Repeats within the Eukaryotes. Molecular Biology and Evolution vol. 31, n° 5, p. 1132-1148 WOS:000335914400007
ISSN
0737-4038
https://dx.doi.org/10.1093/molbev/msu062
Chevenet Francois, Jung Matthieu, Peeters Martine, deOliveira Tulio & Gascuel Olivier, 2013 — Searching for virus phylotypes. Bioinformatics vol. 29, n° 5, p. 561-570 WOS:000315623000004
ISSN
1367-4803
https://dx.doi.org/10.1093/bioinformatics/btt010
Pardi Fabio & Gascuel Olivier, 2012 — Combinatorics of distance-based tree inference. Proceedings of the National Academy of Sciences of the United States of America vol. 109, n° 41, p. 16443-16448
ISSN
0027-8424
https://dx.doi.org/10.1073/pnas.1118368109
Le Si Quang, Dang Cuong Cao & Gascuel Olivier, 2012 — Modeling Protein Evolution with Several Amino Acid Replacement Matrices Depending on Site Rates. Molecular Biology and Evolution vol. 29, n° 10, p. 2921-2936
ISSN
0737-4038
https://dx.doi.org/10.1093/molbev/mss112
Jung Matthieu, Leye Nafissatou, Vidal Nicole, Fargette Denis, Diop Halimatou, Kane Coumba Toure, Gascuel Olivier & Peeters Martine, 2012 — The Origin and Evolutionary History of HIV-1 Subtype C in Senegal. Plos One vol. 7, n° 3, e33579
ISSN
1932-6203
https://dx.doi.org/10.1371/journal.pone.0033579
Mooers Arne, Gascuel Olivier, Stadler Tanja, Li Heyang & Steel Mike, 2012 — Branch Lengths on Birth-Death Trees and the Expected Loss of Phylogenetic Diversity. Systematic Biology vol. 61, n° 2, p. 195-203
ISSN
1063-5157
https://dx.doi.org/10.1093/sysbio/syr090
Lajoie Mathieu, Gascuel Olivier, Lefort Vincent & Brehelin Laurent, 2012 — Computational discovery of regulatory elements in a continuous expression space. Genome Biology vol. 13, n° 11, R109
ISSN
1474-760X
https://dx.doi.org/10.1186/gb-2012-13-11-r109
Anisimova Maria, Gil Manuel, Dufayard Jean-Francois, Dessimoz Christophe & Gascuel Olivier, 2011 — Survey of Branch Support Methods Demonstrates Accuracy, Power, and Robustness of Fast Likelihood-based Approximation Schemes. Systematic Biology vol. 60, n° 5, p. 685-699
ISSN
1063-5157
https://dx.doi.org/10.1093/sysbio/syr041
Blanquart Samuel & Gascuel Olivier, 2011 — Mitochondrial genes support a common origin of rodent malaria parasites and Plasmodium falciparum’s relatives infecting great apes. Bmc Evolutionary Biology vol. 11, , p. 70
ISSN
1471-2148
https://dx.doi.org/10.1186/1471-2148-11-70
Chang Jia-Ming, Di Tommaso Paolo, Lefort Vincent, Gascuel Olivier & Notredame Cedric, 2015 — TCS : a web server for multiple sequence alignment evaluation and phylogenetic reconstruction. Nucleic Acids Research vol. 43, W1, W3–W6
ISSN
0305-1048
https://dx.doi.org/10.1093/nar/gkv310
Seo Tae-Kun, Gascuel Olivier & Thorne Jeffrey L, 2022 — Measuring Phylogenetic Information of Incomplete Sequence Data. Abstract Widely used approaches for extracting phylogenetic information from aligned sets of molecular sequences rely upon… Systematic Biology vol. 71, n° 3, p. 630-648
ISSN
1063-5157, 1076-836X
https://dx.doi.org/10.1093/sysbio/syab073
Jouault Corentin, Legendre Frédéric, Condamine Fabien L. & Nel André, 2021 — Corrigendum: A new stonefly species (Plecoptera: Perlodidae) from Eocene Baltic amber and questions on the wing venation potential for species diagnostic of fossil Plecoptera. Palaeoentomology vol. 4, n° 4,
ISSN
2624-2834, 2624-2826
https://dx.doi.org/10.11646/palaeoentomology.4.4.4
Pietras Marcin, Kolanowska Marta & Selosse Marc-André, 2021 — Quo vadis? Historical distribution and impact of climate change on the worldwide distribution of the Australasian fungus Clathrus archeri (Phallales, Basidiomycota). Abstract Clathrus archeri is a fungus native to Australia and New Zealand that has started to expand into Europe, and it is… Mycological Progress vol. 20, n° 3, p. 299-311
ISSN
1617-416X, 1861-8952
https://dx.doi.org/10.1007/s11557-021-01669-w