, 2022 — From Genomics to Integrative Taxonomy? The Case Study of Pocillopora Corals. Abstract
With the advent of genomics, sequencing thousands of loci from hundreds
of individuals now appears feasible at… bioRxiv PREPRINT , , PREPRINT
, 2021 — Long-term evolution of quantitative traits in the Drosophila melanogaster species subgroup. PREPRINT BIORXIV , , PREPRINT
, 2014 — « Diversity and distribution of the genus Rothisilpha (Dictyoptera, Blattidae) in New Caledonia : » in Zoologia Neocaledonica 8. Biodiversity Studies in New Caledonia... vol. 206, n° 8, dir. Mémoires du Muséum national d'Histoire naturelle, Publications scientifiques du Muséum p. 301-310
ISBN
978-2-85653-707-7
, novembre 2021 — Sensitive Detection of Site-wise Convergent Evolution in Large Protein Alignments with ConDor. Evolutionary convergences are observed at all levels, from phenotype to DNA and protein sequences, and the changes observed at… , , Type: 10.1101/2021.06.30.450558
, novembre 2020 — Differing impacts of global and regional responses on SARS-CoV-2 transmission cluster dynamics.. bioRxiv : the preprint server for biology , , MEDLINE:33173870
, 2021 — Soft Selective Sweep on Chemosensory Genes Correlates with Ancestral Preference for Toxic Noni in a Specialist Drosophila Population. Understanding how organisms adapt to environmental changes is a major question in evolution and ecology. In particular, the… Genes vol. 12, n° 1, p. 32 ISBN: 2073-4425 Publisher: MDPI Type: 10.3390/genes12010032
, décembre 2022 — Deep learning from phylogenies to uncover the epidemiological dynamics of outbreaks. Nature Communications vol. 13, n° 1, p. 3896
ISSN
2041-1723
, 2022 — Genome-wide diversity of Zika virus: Exploring spatio-temporal dynamics to guide a new nomenclature proposal. Virus Evolution vol. 8, n° 1, veac029
ISSN
2057-1577
, 2022 — Measuring Phylogenetic Information of Incomplete Sequence Data. Abstract Widely used approaches for extracting phylogenetic information from aligned sets of molecular sequences rely upon… Systematic Biology vol. 71, n° 3, p. 630-648
ISSN
1063-5157, 1076-836X
, 2022 — Draft genome of the lowland anoa (Bubalus depressicornis) and comparison with buffalo genome assemblies (Bovidae, Bubalina). G3-GENES GENOMES GENETICS vol. 12, n° 11, tex.earlyaccessdate: SEP 2022 tex.orcid-numbers: Ropiquet, Anne/0000-0003-3755-5467 Hassanin, Alexandre/0000-0002-4905-8540 Curaudeau, Manon/0000-0003-3356-0701 Porrelli, Stefano/0000-0003-3878-7745 tex.researcherid-numbers: Ropiquet, Anne/E-6154-2011 Has
ISSN
2160-1836
, juillet 2022 — A tutorial on the balanced minimum evolution problem. EUROPEAN JOURNAL OF OPERATIONAL RESEARCH vol. 300, n° 1, p. 1-19 tex.earlyaccessdate: FEB 2022 tex.eissn: 1872-6860 tex.orcid-numbers: Catanzaro, Daniele/0000-0001-9427-1562 Pesenti, Raffaele/0000-0001-5890-4238 GASCUEL, Olivier/0000-0002-9412-9723 Frohn, Martin/0000-0002-5002-4049 tex.researcherid-numbers: Frohn, Mart
ISSN
0377-2217
, 2022 — Deciphering RNA G-quadruplex function during the early steps of HIV-1 infection. Abstract G-quadruplexes (G4s) are four-stranded nucleic acid structures formed by the stacking of G-tetrads. Here we… Nucleic Acids Research vol. 50, n° 21, p. 12328-12343
ISSN
0305-1048, 1362-4962
, 2022 — < span style="font-variant:small-caps;">TiPS</span> : Rapidly simulating trajectories and phylogenies from compartmental models. Methods in Ecology and Evolution , , 2041–210X.14038
ISSN
2041-210X, 2041-210X
, 2023 — Fast and Accurate Maximum-Likelihood Estimation of Multi-Type Birth-Death Epidemiological Models from Phylogenetic Trees. Abstract Multi-type birth-death (MTBD) models are phylodynamic analogies of compartmental models in classical epidemiology… Systematic Biology , , syad059
ISSN
1063-5157, 1076-836X
, 2023 — Modeling Drug Resistance Emergence and Transmission in HIV-1 in the UK. A deeper understanding of HIV-1 transmission and drug resistance mechanisms can lead to improvements in current treatment… Viruses vol. 15, n° 6, p. 1244
ISSN
1999-4915
, 2023 — In-depth characterization of full-length archived viral genomes after nine years of posttreatment HIV control. MICROBIOLOGY SPECTRUM vol. 11, n° 1, tex.earlyaccessdate: JAN 2023 tex.orcid-numbers: Saez-Cirion, Asier/0000-0003-2406-7536 Avettand-Fenoel, Veronique/0000-0002-7022-2990 TREMEAUX, Pauline/0000-0001-8783-9885 tex.researcherid-numbers: avettand-fenoel, veronique/A-4707-2012 Saez-Cirion, Asie
ISSN
2165-0497
, 2023 — Robustness of Felsenstein’s versus Transfer Bootstrap Supports with respect to Taxon Sampling. Abstract The bootstrap method is based on resampling sequence alignments and re-estimating trees. Felsenstein’s bootstrap… Systematic Biology vol. 72, n° 6, syad052
ISSN
1063-5157, 1076-836X
, mars 2023 — Resolving Between Novelty and Homology in the Rapidly Evolving Phallus of Drosophila. The genitalia present some of the most rapidly evolving anatomical structures in the animal kingdom, possessing a variety of… Journal of Experimental Zoology Part B: Molecular and Developmental Evolution vol. 340, n° 2, p. 182-196 ISBN: 1552-5007 Publisher: Wiley Type: 10.1002/jez.b.23113
, 2023 — A massively parallel branch-&-bound algorithm for the balanced minimum evolution problem. Computers & Operations Research vol. 158, , p. 106308
ISSN
03050548
, 2025 — multistrap: boosting phylogenetic analyses with structural information. Nature Communications vol. 16, n° 1, p. 293
ISSN
2041-1723