Liste des publications

Barilar Ivan, Fernando Tatiana, Utpatel Christian, Abujate Cláudio, Madeira Carla Maria, José Benedita, Mutaquiha Claudia, Kranzer Katharina, Niemann Tanja, Ismael Nalia, De Araujo Leonardo, Wirth Thierry, Niemann Stefan & Viegas Sofia, 2024 — Emergence of bedaquiline-resistant tuberculosis and of multidrug-resistant and extensively drug-resistant Mycobacterium tuberculosis strains with rpoB Ile491Phe mutation not detected by Xpert MTB/RIF in Mozambique: a retrospective observational study. The Lancet Infectious Diseases vol. 24, n° 3, p. 297-307

ISSN

14733099

https://dx.doi.org/10.1016/S1473-3099(23)00498-X

Wirth Thierry, 2023 — Histoire évolutive et phylogéographie du bacille de Koch. Bulletin de l’Académie Nationale de Médecine vol. 207, n° 8, p. 1034-1043

ISSN

00014079

https://dx.doi.org/10.1016/j.banm.2023.05.003

Merker Matthias, Rasigade Jean-Philippe, Barbier Maxime, Cox Helen, Feuerriegel Silke, Kohl Thomas A., Shitikov Egor, Klaos Kadri, Gaudin Cyril, Antoine Rudy, Diel Roland, Borrell Sonia, Gagneux Sebastien, Nikolayevskyy Vladyslav, Andres Sönke et al., 2022 — Transcontinental spread and evolution of Mycobacterium tuberculosis W148 European/Russian clade toward extensively drug resistant tuberculosis. Nature Communications vol. 13, n° 1, p. 5105

ISSN

2041-1723

https://dx.doi.org/10.1038/s41467-022-32455-1

Sassi Mohamed, Bronsard Julie, Pascreau Gaetan, Emily Mathieu, Donnio Pierre-Yves, Revest Matthieu, Felden Brice, Wirth Thierry & Augagneur Yoann, 2022 — Forecasting Staphylococcus aureus Infections Using Genome-Wide Association Studies, Machine Learning, and Transcriptomic Approaches. mSystems , , e00378–22

ISSN

2379-5077

https://dx.doi.org/10.1128/msystems.00378-22

Dreyer Viola, Mandal Ayan, Dev Prachi, Merker Matthias, Barilar Ivan, Utpatel Christian, Nilgiriwala Kayzad, Rodrigues Camilla, Crook Derrick W., the CRyPTIC Consortium and Crook Derrick W., Peto Timothy E. A., Walker A. Sarah, Hoosdally Sarah J., Gibertoni Cruz Ana L., Carter Joshua et al., 2022 — High fluoroquinolone resistance proportions among multidrug-resistant tuberculosis driven by dominant L2 Mycobacterium tuberculosis clones in the Mumbai Metropolitan Region. Genome Medicine vol. 14, n° 1, p. 95

ISSN

1756-994X

https://dx.doi.org/10.1186/s13073-022-01076-0

Wirth Thierry, octobre 2021 — When specialized clones go global. Nature Microbiology vol. 6, n° 10, p. 1215-1216

ISSN

2058-5276

https://dx.doi.org/10.1038/s41564-021-00967-z

Alili Rohia, Belda Eugeni, Le Phuong, Wirth Thierry, Zucker Jean-Daniel, Prifti Edi & Clément Karine, 2021 — Exploring Semi-Quantitative Metagenomic Studies Using Oxford Nanopore Sequencing: A Computational and Experimental Protocol. Genes vol. 12, n° 10, p. 1496

ISSN

2073-4425

https://dx.doi.org/10.3390/genes12101496

Moura Alexandra, Lefrancq Noémie, Leclercq Alexandre, Wirth Thierry, Borges Vítor, Gilpin Brent, Dallman Timothy, Frey Joachim, Franz Eelco, Nielsen Eva, Thomas Juno, Pightling Arthur, Howden Benjamin, Tarr Cheryl, Gerner-Smidt Peter et al., décembre 2020 — Emergence and global spread of Listeria monocytogenes main clinical clonal complex. Retracing microbial emergence and spread is essential to understanding the evolution and dynamics of pathogens. The bacterial… Science Advances vol. 7, n° 49, eabj9805 Type: 10.1101/2020.12.18.423387

ISSN

2375-2548

https://dx.doi.org/10.1126/sciadv.abj9805

Wirth Thierry, juillet 2020 — Applied phyloepidemiology: Detecting drivers of pathogen transmission from genomic signatures using density measures. AbstractUnderstanding the driving forces of an epidemic is key to inform intervention strat- egies against it. Correlating… Evolutionary Applications vol. 13, n° 6, p. 1513-1525 ISBN: 1752-4563 Publisher: Blackwell Type: 10.1111/eva.12991

ISSN

1752-4571, 1752-4571

https://dx.doi.org/10.1111/eva.12991

Wirth Thierry, Bergot Marine, Rasigade Jean-Philippe, Pichon Bruno, Barbier Maxime, Martins-Simoes Patricia, Jacob Laurent, Pike Rachel, Tissieres Pierre, Picaud Jean-Charles, Kearns Angela, Supply Philip, Butin Marine & Laurent Frédéric, mai 2020 — Niche specialization and spread of Staphylococcus capitis involved in neonatal sepsis. Nature Microbiology vol. 5, n° 5, p. 735-745

ISSN

2058-5276

https://dx.doi.org/10.1038/s41564-020-0676-2

Franssen Susanne U, Durrant Caroline, Stark Olivia, Moser Bettina, Downing Tim, Imamura Hideo, Dujardin Jean-Claude, Sanders Mandy J, Mauricio Isabel, Miles Michael A, Schnur Lionel F, Jaffe Charles L, Nasereddin Abdelmajeed, Schallig Henk, Yeo Matthew et al., 2020 — Global genome diversity of the Leishmania donovani complex. eLife vol. 9, , e51243

ISSN

2050-084X

https://dx.doi.org/10.7554/eLife.51243

Kohl Thomas A., Kranzer Katharina, Andres Sönke, Wirth Thierry, Niemann Stefan & Moser Irmgard, 2020 — Population Structure of Mycobacterium bovis in Germany: a Long-Term Study Using Whole-Genome Sequencing Combined with Conventional Molecular Typing Methods. Journal of Clinical Microbiology vol. 58, n° 11, e01573–20, /jcm/58/11/JCM.01573–20.atom

ISSN

0095-1137, 1098-660X

https://dx.doi.org/10.1128/JCM.01573-20

Tevell Staffan, Baig Sharmin, Hellmark Bengt, Martins Simoes Patricia, Wirth Thierry, Butin Marine, Nilsdotter-Augustinsson Åsa, Söderquist Bo & Stegger Marc, 2020 — Presence of the neonatal Staphylococcus capitis outbreak clone (NRCS-A) in prosthetic joint infections. Scientific Reports vol. 10, n° 1, p. 22389

ISSN

2045-2322

https://dx.doi.org/10.1038/s41598-020-79225-x

Arandjelović Irena, Merker Matthias, Richter Elvira, Kohl Thomas A., Savić Branislava, Soldatović Ivan, Wirth Thierry, Vuković Dragana & Niemann Stefan, mars 2019 — Longitudinal Outbreak of Multidrug-Resistant Tuberculosis in a Hospital Setting, Serbia. Emerging Infectious Diseases vol. 25, n° 3, p. 555-558

ISSN

1080-6040, 1080-6059

https://dx.doi.org/10.3201/eid2503.181220

Bal A., Sabatier M., Wirth T., Coste-Burel M., Lazrek M., Stefic K., Brengel-Pesce K., Morfin F., Lina B., Schuffenecker I. & Josset L., janvier 2019 — Emergence of enterovirus D68 clade D1, France, August to November 2018. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin vol. 24, n° 3, Citation Key Alias: bal\_emergence\_2019-1

ISSN

1560-7917 (Electronic) 1025-496X (Linking)

https://dx.doi.org/10.2807/1560-7917.ES.2019.24.3.1800699

Merker M., Barbier M., Cox H., Rasigade J. P., Feuerriegel S., Kohl T. A., Diel R., Borrell S., Gagneux S., Nikolayevskyy V., Andres S., Nubel U., Supply P., Wirth T. & Niemann S., octobre 2018 — Compensatory evolution drives multidrug-resistant tuberculosis in Central Asia. eLife vol. 7, ,

ISSN

2050-084X (Electronic) 2050-084X (Linking)

https://dx.doi.org/10.7554/eLife.38200

Lalis Aude & Wirth Thierry, 2018 — « Mice and Men: an Evolutionary History of Lassa Fever » in Biodiversity and Evolution.. , , dir. Elsevier p. 189-212

ISBN

978-1-78548-277-9

https://dx.doi.org/10.1016/B978-1-78548-277-9.50011-5

Barbier M., Dumitrescu O., Pichat C., Carret G., Ronnaux-Baron A. S., Blasquez G., Godin-Benhaim C., Boisset S., Carricajo A., Jacomo V., Fredenucci I., Perouse de Montclos M., Genestet C., Flandrois J. P., Ader F. et al., 2018 — Changing patterns of human migrations shaped the global population structure of Mycobacterium tuberculosis in France. Scientific reports vol. 8, n° 1, p. 5855

ISSN

2045-2322 (Electronic) 2045-2322 (Linking)

https://dx.doi.org/10.1038/s41598-018-24034-6

Gustave C. A., Tristan A., Martins-Simoes P., Stegger M., Benito Y., Andersen P. S., Bes M., Le Hir T., Diep B. A., Uhlemann A. C., Glaser P., Laurent F., Wirth T. & Vandenesch F., 2018 — Demographic fluctuation of community-acquired antibiotic-resistant Staphylococcus aureus lineages: potential role of flimsy antibiotic exposure. Isme Journal vol. 12, n° 8, p. 1879-1894

ISSN

1751-7370 (Electronic) 1751-7362 (Linking)

https://dx.doi.org/10.1038/s41396-018-0110-4

Kramer R., Sabatier M., Wirth T., Pichon M., Lina B., Schuffenecker I. & Josset L., 2018 — Molecular diversity and biennial circulation of enterovirus D68: a systematic screening study in Lyon, France, 2010 to 2016. Eurosurveillance vol. 23, n° 37,

ISSN

1560-7917 (Electronic) 1025-496X (Linking)

https://dx.doi.org/10.2807/1560-7917.ES.2018.23.37.1700711

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