Liste des publications

Dai Yuping, Boussaguet Ni, Teulière Jérôme, Bonnefous Hugo, Budzinski Elphège, Lopez Philippe, Haraoui Louis-Patrick, et Bapteste Eric. 2025. « Interspecific interactions and aging: Prediction of gerogenic bacteria and critical human protein targets of microbial infections ». Mechanisms of Ageing and Development 226 (août). Elsevier: 112076. https://hal.science/hal-05347044.

Gomez-Raya-Vilanova Miguel, Teulière Jérôme, Medvedeva Sofia, Dai Yuping, Corel Eduardo, Lopez Philippe, Lapointe François-Joseph, et al. 2025. « Transcriptional landscape of the cell cycle in a model thermoacidophilic archaeon reveals similarities to eukaryotes ». Nature Communications 16 (juillet). Nature Publishing Group: 5697. https://pasteur.hal.science/pasteur-05141107.

Sussfeld Duncan, Lannes Romain, Corel Eduardo, Bernard Guillaume, Martin Pierre, Bapteste Eric, Pelletier Eric, et Lopez Philippe. 2025. « New groups of highly divergent proteins in families as old as cellular life with important biological functions in the ocean ». Environmental Microbiome 20 (juin). BioMedCentral: 65. https://hal.science/hal-05347054.

Bonnefous H., Teulière J., Lapointe F.J., Lopez P., et Bapteste E. 2024. « Most genetic roots of fungal and animal aging are hundreds of millions of years old according to phylostratigraphy analyses of aging networks ». GeroScience, janvier. doi:https://rdcu.be/dKFlV.

Bonnefous H, Teulière J, Lapointe FJ, Lopez P, et Bapteste E. 2024. « Most genetic roots of fungal and animal aging are hundreds of millions of years old according to phylostratigraphy analyses of aging networks ». GEROSCIENCE, janvier. doi:10.1007/s11357-024-01234-9.

Denoeud France, Godfroy Olivier, Cruaud Corinne, Heesch Svenja, Nehr Zofia, Tadrent Nachida, Couloux Arnaud, et al. 2024. « Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems ». Cell, janvier. Elsevier. https://hal.science/hal-04794231.

Denoeud France, Godfroy Olivier, Cruaud Corinne, Heesch Svenja, Nehr Zofia, Tadrent Nachida, Couloux Arnaud, et al. 2024. « Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems ». Cell 187 (janvier): 6943–6965.e39. doi:10.1016/j.cell.2024.10.049.

Bernard Charles, Li Yanyan, Lopez Philippe, et Bapteste Eric. 2023. « Large-Scale Identification of Known and Novel RRNPP Quorum-Sensing Systems by RRNPP_Detector Captures Novel Features of Bacterial, Plasmidic, and Viral Coevolution ». Molecular Biology and Evolution 40 (avril). https://hal.science/hal-04246120.

Teulière J, Bernard C, Bonnefous H, Martens J, Lopez P, et Bapteste E. 2023. « Interactomics: Dozens of Viruses, Co-evolving With Humans, Including the Influenza A Virus, may Actively Distort Human Aging ». MOLECULAR BIOLOGY AND EVOLUTION 40 (janvier): msad012. doi:10.1093/molbev/msad012.

Bapteste Eric, Huneman Philippe, Keller Laurent, Teulière Jérôme, Lopez Philippe, Teeling Emma C., Lindner Ariel B., Baudisch Annette, Ludington William B., et Franceschi Claudio. 2023. « Expanding evolutionary theories of ageing to better account for symbioses and interactions throughout the Web of Life ». Ageing Research Reviews 89 (janvier): 101982. doi:10.1016/j.arr.2023.101982.

Aggarwal Shifu, Huang Elaine, Do Hackwon, Makthal Nishanth, Li Yanyan, Bapteste Eric, Lopez Philippe, Bernard Charles, et Kumaraswami Muthiah. 2023. « The leaderless communication peptide (LCP) class of quorum-sensing peptides is broadly distributed among Firmicutes ». Nature Communications 14 (janvier): 5947. doi:10.1038/s41467-023-41719-3.

Lemieux-Labonté Virginie, Vigliotti Chloé, Tadic Zoran, Wehrle Beck, Lopez Philippe, Bapteste Eric, Lapointe François-Joseph, German Donovan P., et Herrel Anthony. 2022. « Proximate Drivers of Population-Level Lizard Gut Microbial Diversity: Impacts of Diet, Insularity, and Local Environment ». Microorganisms 10 (janvier): 1550. doi:10.3390/microorganisms10081550.

Bernard Guillaume, Teuliere Jerome, Lopez Philippe, Corel Eduardo, Lapointe Francois-Joseph, et Bapteste Eric. 2022. « Aging at Evolutionary Crossroads: Longitudinal Gene Co-expression Network Analyses of Proximal and Ultimate Causes of Aging in Bats ». Molecular Biology and Evolution 39 (janvier): msab302. doi:10.1093/molbev/msab302.

Teulière Jérôme, Bernard Charles, Corel Eduardo, Lapointe François-Joseph, Martens Johannes, Lopez Philippe, et Bapteste Eric. 2022. « Network analyses unveil ageing-associated pathways evolutionarily conserved from fungi to animals ». GeroScience, janvier. doi:10.1007/s11357-022-00704-2.

Watson Andrew, Lopez Philippe, et Bapteste Eric. 2022. « Hundreds of out-of-frame remodeled gene families in the escherichia coli pangenome ». Molecular Biology and Evolution 39 (janvier): msab329. doi:10.1093/molbev/msab329.

Watson Andrew K, Lopez Philippe, et Bapteste Eric. 2021. « Hundreds of out-of-frame remodelled gene families in the E. coli pangenome ». Molecular Biology and Evolution, novembre, msab329. doi:10.1093/molbev/msab329/6430988.

Bernard Charles, Li Yanyan, Bapteste Eric, et Lopez Philippe. 2021. RRNPP_detector: a tool to detect RRNPP quorum sensing systems in chromosomes, plasmids and phages of gram-positive bacteria. https://hal.archives-ouvertes.fr/hal-03384406.

Bernard Charles, Li Yanyan, Lopez Philippe, et Bapteste Eric. 2021. Large-scale identification of viral quorum sensing systems reveals density-dependent sporulation-hijacking mechanisms in bacteriophages. https://hal.archives-ouvertes.fr/hal-03384404.

Bapteste Eric, Gérard Philippe, Larose Catherine, Blouin Manuel, Not Fabrice, Campos Liliane, Aïdan Géraldine, et al. 2021. « The Epistemic Revolution Induced by Microbiome Studies: An Interdisciplinary View ». Biology 10 (janvier): 651. doi:10.3390/biology10070651.

Bernard Charles, Li Yanyan, Lopez Philippe, et Bapteste Eric. 2021. « Beyond arbitrium: identification of a second communication system in Bacillus phage phi3T that may regulate host defense mechanisms ». Isme Journal 15 (janvier): 545–549. doi:10.1038/s41396-020-00795-9.